Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
RPUSD3Q6P087 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.64■□□□□ 0.9
RPUSD3Q6P087 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RPUSD3Q6P087 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.64■□□□□ 0.9
RPUSD3Q6P087 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RPUSD3Q6P087 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RPUSD3Q6P087 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 MIR3181-201ENST00000578512 73 ntBASIC20.63■□□□□ 0.89
RPUSD3Q6P087 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPUSD3Q6P087 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RPUSD3Q6P087 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 AC006455.2-201ENST00000429931 906 ntBASIC20.61■□□□□ 0.89
RPUSD3Q6P087 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 AC087623.3-201ENST00000607047 1098 ntBASIC20.61■□□□□ 0.89
RPUSD3Q6P087 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPUSD3Q6P087 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RPUSD3Q6P087 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPUSD3Q6P087 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RPUSD3Q6P087 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RPUSD3Q6P087 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.58■□□□□ 0.88
RPUSD3Q6P087 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 AL162430.1-201ENST00000480705 870 ntBASIC20.57■□□□□ 0.88
RPUSD3Q6P087 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RPUSD3Q6P087 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPUSD3Q6P087 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPUSD3Q6P087 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPUSD3Q6P087 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms