Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC142381.3-201ENST00000568208 1670 ntBASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 RASA4CP-201ENST00000424092 1398 ntBASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNFT1Q5M7Z0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNFT1Q5M7Z0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 AC099791.1-201ENST00000416440 715 ntBASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 AC027682.1-201ENST00000562846 899 ntBASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 AC020928.2-201ENST00000588717 2197 ntBASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.46■□□□□ 0.87
RNFT1Q5M7Z0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RNFT1Q5M7Z0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 pRNA.6-201ENST00000610482 90 ntBASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 pRNA.5-201ENST00000612139 90 ntBASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 pRNA.11-201ENST00000618423 90 ntBASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 pRNA.13-201ENST00000619112 90 ntBASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNFT1Q5M7Z0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNFT1Q5M7Z0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RNFT1Q5M7Z0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 AC233992.3-201ENST00000607491 485 ntBASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNFT1Q5M7Z0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.4■□□□□ 0.86
RNFT1Q5M7Z0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RNFT1Q5M7Z0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNFT1Q5M7Z0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.39■□□□□ 0.86
RNFT1Q5M7Z0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNFT1Q5M7Z0 AC141586.4-201ENST00000624558 1573 ntBASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 BX842568.3-201ENST00000418104 571 ntBASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNFT1Q5M7Z0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms