Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 AC110285.6-201ENST00000617652 491 ntBASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 UNC93B8-201ENST00000511903 705 ntBASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PDLIM3Q53GG5 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 MIR5787-201ENST00000611784 55 ntBASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
PDLIM3Q53GG5 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.54■□□□□ 0.56
PDLIM3Q53GG5 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 AL136116.3-201ENST00000402907 1138 ntBASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 AC026271.2-201ENST00000428091 497 ntBASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 AC131281.2-201ENST00000520478 145 ntBASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PDLIM3Q53GG5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
PDLIM3Q53GG5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PDLIM3Q53GG5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PDLIM3Q53GG5 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 AC079834.2-201ENST00000609776 1949 ntBASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 BX664725.1-201ENST00000438252 379 ntBASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PDLIM3Q53GG5 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms