Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 MIR572-201ENST00000384983 95 ntBASIC25.26■■□□□ 1.63
NKX3-2P78367 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.26■■□□□ 1.63
NKX3-2P78367 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.25■■□□□ 1.63
NKX3-2P78367 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
NKX3-2P78367 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX3-2P78367 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX3-2P78367 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX3-2P78367 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
NKX3-2P78367 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
NKX3-2P78367 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX3-2P78367 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
NKX3-2P78367 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
NKX3-2P78367 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX3-2P78367 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX3-2P78367 AC092437.1-201ENST00000624794 1048 ntBASIC25.24■■□□□ 1.63
NKX3-2P78367 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.24■■□□□ 1.63
NKX3-2P78367 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX3-2P78367 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX3-2P78367 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX3-2P78367 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX3-2P78367 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX3-2P78367 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.23■■□□□ 1.63
NKX3-2P78367 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
NKX3-2P78367 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.23■■□□□ 1.63
NKX3-2P78367 AC090192.1-201ENST00000517740 490 ntBASIC25.23■■□□□ 1.63
NKX3-2P78367 AL499627.2-201ENST00000606283 725 ntBASIC25.23■■□□□ 1.63
NKX3-2P78367 IKBKGP1-201ENST00000612193 1073 ntBASIC25.23■■□□□ 1.63
NKX3-2P78367 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX3-2P78367 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX3-2P78367 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX3-2P78367 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX3-2P78367 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX3-2P78367 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX3-2P78367 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.22■■□□□ 1.63
NKX3-2P78367 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.22■■□□□ 1.63
NKX3-2P78367 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
NKX3-2P78367 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.22■■□□□ 1.63
NKX3-2P78367 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.22■■□□□ 1.63
NKX3-2P78367 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.22■■□□□ 1.63
NKX3-2P78367 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.22■■□□□ 1.63
NKX3-2P78367 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX3-2P78367 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
NKX3-2P78367 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.21■■□□□ 1.63
NKX3-2P78367 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
NKX3-2P78367 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
NKX3-2P78367 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
NKX3-2P78367 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.21■■□□□ 1.63
NKX3-2P78367 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
NKX3-2P78367 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.21■■□□□ 1.63
NKX3-2P78367 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
NKX3-2P78367 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
NKX3-2P78367 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.2■■□□□ 1.62
NKX3-2P78367 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NKX3-2P78367 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.2■■□□□ 1.62
NKX3-2P78367 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.2■■□□□ 1.62
NKX3-2P78367 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
NKX3-2P78367 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.2■■□□□ 1.62
NKX3-2P78367 AL137784.2-201ENST00000607332 1000 ntBASIC25.2■■□□□ 1.62
NKX3-2P78367 AL354811.1-201ENST00000610286 706 ntBASIC25.2■■□□□ 1.62
NKX3-2P78367 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.2■■□□□ 1.62
NKX3-2P78367 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.2■■□□□ 1.62
NKX3-2P78367 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.19■■□□□ 1.62
NKX3-2P78367 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
NKX3-2P78367 AC012414.1-201ENST00000556676 535 ntBASIC25.19■■□□□ 1.62
NKX3-2P78367 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.19■■□□□ 1.62
NKX3-2P78367 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.19■■□□□ 1.62
NKX3-2P78367 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.19■■□□□ 1.62
NKX3-2P78367 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX3-2P78367 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.18■■□□□ 1.62
NKX3-2P78367 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
NKX3-2P78367 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
NKX3-2P78367 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.18■■□□□ 1.62
NKX3-2P78367 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.18■■□□□ 1.62
NKX3-2P78367 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.18■■□□□ 1.62
NKX3-2P78367 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
NKX3-2P78367 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
NKX3-2P78367 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
NKX3-2P78367 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.18■■□□□ 1.62
NKX3-2P78367 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
NKX3-2P78367 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms