Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
FOXA3P55318 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA3P55318 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA3P55318 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
FOXA3P55318 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA3P55318 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
FOXA3P55318 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXA3P55318 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXA3P55318 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA3P55318 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXA3P55318 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA3P55318 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA3P55318 DUX4L11-201ENST00000611504 1267 ntBASIC16.89■□□□□ 0.29
FOXA3P55318 DUX4L12-201ENST00000614593 1267 ntBASIC16.89■□□□□ 0.29
FOXA3P55318 DUX4L14-201ENST00000621227 1267 ntBASIC16.89■□□□□ 0.29
FOXA3P55318 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA3P55318 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA3P55318 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA3P55318 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
FOXA3P55318 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC16.88■□□□□ 0.29
FOXA3P55318 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA3P55318 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
FOXA3P55318 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA3P55318 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA3P55318 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA3P55318 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA3P55318 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
FOXA3P55318 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC16.88■□□□□ 0.29
FOXA3P55318 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA3P55318 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
FOXA3P55318 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA3P55318 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA3P55318 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA3P55318 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA3P55318 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
FOXA3P55318 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA3P55318 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
FOXA3P55318 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
FOXA3P55318 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA3P55318 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 KRT18P10-201ENST00000388836 1287 ntBASIC16.86■□□□□ 0.29
FOXA3P55318 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
FOXA3P55318 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA3P55318 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA3P55318 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA3P55318 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA3P55318 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
FOXA3P55318 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA3P55318 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.85■□□□□ 0.29
FOXA3P55318 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXA3P55318 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXA3P55318 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA3P55318 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA3P55318 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA3P55318 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA3P55318 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA3P55318 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
FOXA3P55318 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms