Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.15■□□□□ 0.34
HLA-DMBP28068 ALDH1A3-203ENST00000557963 1670 ntBASIC17.15■□□□□ 0.34
HLA-DMBP28068 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DMBP28068 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HLA-DMBP28068 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.34
HLA-DMBP28068 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HLA-DMBP28068 C1orf229-201ENST00000623686 2258 ntBASIC17.14■□□□□ 0.33
HLA-DMBP28068 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DMBP28068 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 AC022616.5-201ENST00000518796 181 ntBASIC17.14■□□□□ 0.33
HLA-DMBP28068 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DMBP28068 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DMBP28068 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DMBP28068 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DMBP28068 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DMBP28068 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DMBP28068 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DMBP28068 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DMBP28068 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 AC079834.2-201ENST00000609776 1949 ntBASIC17.12■□□□□ 0.33
HLA-DMBP28068 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DMBP28068 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DMBP28068 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DMBP28068 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DMBP28068 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HLA-DMBP28068 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DMBP28068 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.11■□□□□ 0.33
HLA-DMBP28068 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 AC233723.2-201ENST00000623798 2106 ntBASIC17.11■□□□□ 0.33
HLA-DMBP28068 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.11■□□□□ 0.33
HLA-DMBP28068 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC17.11■□□□□ 0.33
HLA-DMBP28068 AC103834.1-201ENST00000520383 144 ntBASIC17.11■□□□□ 0.33
HLA-DMBP28068 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.11■□□□□ 0.33
HLA-DMBP28068 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC17.11■□□□□ 0.33
HLA-DMBP28068 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DMBP28068 AF131216.4-201ENST00000638924 1588 ntBASIC17.11■□□□□ 0.33
HLA-DMBP28068 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HLA-DMBP28068 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.1■□□□□ 0.33
HLA-DMBP28068 LBH-205ENST00000407930 756 ntTSL 2 BASIC17.1■□□□□ 0.33
HLA-DMBP28068 AL451085.2-201ENST00000605085 799 ntBASIC17.1■□□□□ 0.33
HLA-DMBP28068 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HLA-DMBP28068 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DMBP28068 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DMBP28068 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DMBP28068 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
HLA-DMBP28068 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DMBP28068 MIR4281-201ENST00000580852 62 ntBASIC17.09■□□□□ 0.33
HLA-DMBP28068 MIR4508-201ENST00000584178 70 ntBASIC17.09■□□□□ 0.33
HLA-DMBP28068 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DMBP28068 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DMBP28068 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DMBP28068 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
HLA-DMBP28068 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DMBP28068 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms