Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ATF4P18848 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.7■□□□□ 0.58
ATF4P18848 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
ATF4P18848 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.7■□□□□ 0.58
ATF4P18848 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATF4P18848 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.69■□□□□ 0.58
ATF4P18848 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.69■□□□□ 0.58
ATF4P18848 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ATF4P18848 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
ATF4P18848 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ATF4P18848 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 AC008813.1-201ENST00000536597 885 ntBASIC18.68■□□□□ 0.58
ATF4P18848 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ATF4P18848 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
ATF4P18848 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.68■□□□□ 0.58
ATF4P18848 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ATF4P18848 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ATF4P18848 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.68■□□□□ 0.58
ATF4P18848 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.68■□□□□ 0.58
ATF4P18848 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
ATF4P18848 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATF4P18848 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.67■□□□□ 0.58
ATF4P18848 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATF4P18848 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ATF4P18848 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
ATF4P18848 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.67■□□□□ 0.58
ATF4P18848 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ATF4P18848 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
ATF4P18848 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ATF4P18848 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATF4P18848 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ATF4P18848 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.66■□□□□ 0.58
ATF4P18848 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.66■□□□□ 0.58
ATF4P18848 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.66■□□□□ 0.58
ATF4P18848 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATF4P18848 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.65■□□□□ 0.58
ATF4P18848 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.65■□□□□ 0.58
ATF4P18848 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
ATF4P18848 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.65■□□□□ 0.58
ATF4P18848 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
ATF4P18848 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATF4P18848 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ATF4P18848 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATF4P18848 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
ATF4P18848 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATF4P18848 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.64■□□□□ 0.58
ATF4P18848 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATF4P18848 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
ATF4P18848 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ATF4P18848 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATF4P18848 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.64■□□□□ 0.57
ATF4P18848 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.64■□□□□ 0.57
ATF4P18848 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.64■□□□□ 0.57
ATF4P18848 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATF4P18848 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATF4P18848 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATF4P18848 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.64■□□□□ 0.57
ATF4P18848 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.64■□□□□ 0.57
ATF4P18848 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
ATF4P18848 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms