Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CD74P04233 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CD74P04233 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.03■□□□□ 0.64
CD74P04233 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.03■□□□□ 0.64
CD74P04233 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
CD74P04233 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CD74P04233 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CD74P04233 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.02■□□□□ 0.64
CD74P04233 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.02■□□□□ 0.64
CD74P04233 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.02■□□□□ 0.64
CD74P04233 AC026202.3-201ENST00000600805 1127 ntBASIC19.02■□□□□ 0.64
CD74P04233 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
CD74P04233 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CD74P04233 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CD74P04233 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.01■□□□□ 0.63
CD74P04233 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.01■□□□□ 0.63
CD74P04233 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CD74P04233 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.01■□□□□ 0.63
CD74P04233 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19■□□□□ 0.63
CD74P04233 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CD74P04233 AC007029.1-201ENST00000604183 313 ntBASIC19■□□□□ 0.63
CD74P04233 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CD74P04233 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19■□□□□ 0.63
CD74P04233 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19■□□□□ 0.63
CD74P04233 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CD74P04233 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19■□□□□ 0.63
CD74P04233 AL022069.1-201ENST00000568025 1636 ntBASIC19■□□□□ 0.63
CD74P04233 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CD74P04233 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CD74P04233 AL137060.1-201ENST00000618151 2648 ntBASIC18.99■□□□□ 0.63
CD74P04233 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CD74P04233 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CD74P04233 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CD74P04233 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.99■□□□□ 0.63
CD74P04233 AC139530.1-201ENST00000575312 1977 ntBASIC18.99■□□□□ 0.63
CD74P04233 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CD74P04233 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 AC016575.1-201ENST00000607026 382 ntBASIC18.98■□□□□ 0.63
CD74P04233 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CD74P04233 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CD74P04233 C11orf96-202ENST00000528572 1834 ntBASIC18.97■□□□□ 0.63
CD74P04233 AC092053.2-201ENST00000640557 1818 ntBASIC18.97■□□□□ 0.63
CD74P04233 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.97■□□□□ 0.63
CD74P04233 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.97■□□□□ 0.63
CD74P04233 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CD74P04233 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
CD74P04233 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CD74P04233 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.97■□□□□ 0.63
CD74P04233 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.97■□□□□ 0.63
CD74P04233 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CD74P04233 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.97■□□□□ 0.63
CD74P04233 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 ALDH1A3-203ENST00000557963 1670 ntBASIC18.96■□□□□ 0.63
CD74P04233 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.96■□□□□ 0.63
CD74P04233 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.96■□□□□ 0.63
CD74P04233 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CD74P04233 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms