Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
APOBP04114 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.35□□□□□ -0.11
APOBP04114 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.35□□□□□ -0.11
APOBP04114 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC14.35□□□□□ -0.11
APOBP04114 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
APOBP04114 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.35□□□□□ -0.11
APOBP04114 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.35□□□□□ -0.11
APOBP04114 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 KRT18P6-201ENST00000555540 1265 ntBASIC14.34□□□□□ -0.11
APOBP04114 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 AC010501.1-201ENST00000606270 1962 ntBASIC14.34□□□□□ -0.11
APOBP04114 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.34□□□□□ -0.11
APOBP04114 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC14.34□□□□□ -0.11
APOBP04114 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 USF2-207ENST00000595068 1612 ntTSL 5 BASIC14.34□□□□□ -0.11
APOBP04114 PKM-203ENST00000389093 2279 ntTSL 5 BASIC14.34□□□□□ -0.11
APOBP04114 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
APOBP04114 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
APOBP04114 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 STK32C-205ENST00000456004 607 ntTSL 2 BASIC14.34□□□□□ -0.11
APOBP04114 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
APOBP04114 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
APOBP04114 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC14.34□□□□□ -0.11
APOBP04114 AC241377.3-202ENST00000626088 1088 ntBASIC14.34□□□□□ -0.11
APOBP04114 AC241585.3-202ENST00000628937 1088 ntBASIC14.34□□□□□ -0.11
APOBP04114 AC245100.8-202ENST00000629247 1058 ntBASIC14.34□□□□□ -0.11
APOBP04114 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
APOBP04114 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
APOBP04114 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.11
APOBP04114 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
APOBP04114 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 MIR572-201ENST00000384983 95 ntBASIC14.33□□□□□ -0.12
APOBP04114 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.33□□□□□ -0.12
APOBP04114 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC14.33□□□□□ -0.12
APOBP04114 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
APOBP04114 AL355802.2-201ENST00000402069 882 ntBASIC14.33□□□□□ -0.12
APOBP04114 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14.33□□□□□ -0.12
APOBP04114 AL499627.2-201ENST00000606283 725 ntBASIC14.33□□□□□ -0.12
APOBP04114 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
APOBP04114 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.32□□□□□ -0.12
APOBP04114 PPP1R14BP3-201ENST00000509033 445 ntBASIC14.32□□□□□ -0.12
APOBP04114 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC14.32□□□□□ -0.12
APOBP04114 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC14.32□□□□□ -0.12
APOBP04114 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC14.32□□□□□ -0.12
APOBP04114 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
APOBP04114 TPRG1LP1-201ENST00000598702 760 ntBASIC14.32□□□□□ -0.12
APOBP04114 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC14.32□□□□□ -0.12
APOBP04114 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC14.31□□□□□ -0.12
APOBP04114 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
APOBP04114 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 AC126544.1-201ENST00000580842 1059 ntBASIC14.31□□□□□ -0.12
APOBP04114 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC14.31□□□□□ -0.12
APOBP04114 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
APOBP04114 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
APOBP04114 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC14.31□□□□□ -0.12
APOBP04114 AC091060.1-201ENST00000623524 1766 ntBASIC14.31□□□□□ -0.12
APOBP04114 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC14.31□□□□□ -0.12
APOBP04114 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC14.31□□□□□ -0.12
APOBP04114 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC14.31□□□□□ -0.12
APOBP04114 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.31□□□□□ -0.12
APOBP04114 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC14.3□□□□□ -0.12
APOBP04114 TSPY20P-201ENST00000450910 630 ntBASIC14.3□□□□□ -0.12
APOBP04114 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms