Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AL022069.1-201ENST00000568025 1636 ntBASIC20.64■□□□□ 0.9
SPTA1P02549 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SPTA1P02549 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.64■□□□□ 0.89
SPTA1P02549 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
SPTA1P02549 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.64■□□□□ 0.89
SPTA1P02549 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.64■□□□□ 0.89
SPTA1P02549 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SPTA1P02549 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.64■□□□□ 0.89
SPTA1P02549 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SPTA1P02549 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.64■□□□□ 0.89
SPTA1P02549 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SPTA1P02549 KRT18P61-201ENST00000585825 1298 ntBASIC20.64■□□□□ 0.89
SPTA1P02549 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.64■□□□□ 0.89
SPTA1P02549 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.63■□□□□ 0.89
SPTA1P02549 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SPTA1P02549 AC009086.3-201ENST00000623486 1008 ntBASIC20.63■□□□□ 0.89
SPTA1P02549 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SPTA1P02549 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SPTA1P02549 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SPTA1P02549 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.63■□□□□ 0.89
SPTA1P02549 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.62■□□□□ 0.89
SPTA1P02549 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SPTA1P02549 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.62■□□□□ 0.89
SPTA1P02549 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.62■□□□□ 0.89
SPTA1P02549 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.62■□□□□ 0.89
SPTA1P02549 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.62■□□□□ 0.89
SPTA1P02549 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.62■□□□□ 0.89
SPTA1P02549 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.62■□□□□ 0.89
SPTA1P02549 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SPTA1P02549 AC137761.2-201ENST00000561729 223 ntBASIC20.62■□□□□ 0.89
SPTA1P02549 AC145350.3-201ENST00000569033 163 ntBASIC20.62■□□□□ 0.89
SPTA1P02549 AC091060.1-201ENST00000623524 1766 ntBASIC20.61■□□□□ 0.89
SPTA1P02549 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPTA1P02549 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.61■□□□□ 0.89
SPTA1P02549 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.61■□□□□ 0.89
SPTA1P02549 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SPTA1P02549 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPTA1P02549 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPTA1P02549 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.61■□□□□ 0.89
SPTA1P02549 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.6■□□□□ 0.89
SPTA1P02549 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.6■□□□□ 0.89
SPTA1P02549 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SPTA1P02549 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SPTA1P02549 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.6■□□□□ 0.89
SPTA1P02549 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPTA1P02549 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SPTA1P02549 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.59■□□□□ 0.89
SPTA1P02549 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.59■□□□□ 0.89
SPTA1P02549 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.59■□□□□ 0.89
SPTA1P02549 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SPTA1P02549 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.59■□□□□ 0.89
SPTA1P02549 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SPTA1P02549 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.59■□□□□ 0.89
SPTA1P02549 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.59■□□□□ 0.89
SPTA1P02549 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.59■□□□□ 0.89
SPTA1P02549 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SPTA1P02549 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
SPTA1P02549 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SPTA1P02549 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 CROCCP5-201ENST00000436658 830 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SPTA1P02549 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.58■□□□□ 0.89
SPTA1P02549 pRNA.6-201ENST00000610482 90 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 pRNA.5-201ENST00000612139 90 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 pRNA.11-201ENST00000618423 90 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 pRNA.13-201ENST00000619112 90 ntBASIC20.58■□□□□ 0.89
SPTA1P02549 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPTA1P02549 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SPTA1P02549 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SPTA1P02549 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.57■□□□□ 0.88
SPTA1P02549 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.57■□□□□ 0.88
SPTA1P02549 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SPTA1P02549 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.57■□□□□ 0.88
SPTA1P02549 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SPTA1P02549 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPTA1P02549 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.57■□□□□ 0.88
SPTA1P02549 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.57■□□□□ 0.88
SPTA1P02549 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SPTA1P02549 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.57■□□□□ 0.88
SPTA1P02549 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPTA1P02549 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SPTA1P02549 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPTA1P02549 AC006970.2-201ENST00000450065 779 ntBASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms