Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL3A1P02461 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL3A1P02461 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL3A1P02461 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
COL3A1P02461 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL3A1P02461 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.18■■■□□ 2.42
COL3A1P02461 AC106739.1-201ENST00000617035 715 ntBASIC30.18■■■□□ 2.42
COL3A1P02461 SF1-220ENST00000626028 704 ntTSL 2 BASIC30.18■■■□□ 2.42
COL3A1P02461 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL3A1P02461 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL3A1P02461 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL3A1P02461 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.17■■■□□ 2.42
COL3A1P02461 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 UNC93B3-201ENST00000308076 687 ntBASIC30.16■■■□□ 2.42
COL3A1P02461 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC30.16■■■□□ 2.42
COL3A1P02461 AC024257.2-201ENST00000549699 147 ntBASIC30.16■■■□□ 2.42
COL3A1P02461 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL3A1P02461 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.16■■■□□ 2.42
COL3A1P02461 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC30.15■■■□□ 2.42
COL3A1P02461 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
COL3A1P02461 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL3A1P02461 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.15■■■□□ 2.42
COL3A1P02461 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL3A1P02461 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL3A1P02461 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL3A1P02461 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
COL3A1P02461 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC30.15■■■□□ 2.42
COL3A1P02461 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL3A1P02461 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL3A1P02461 AC019069.1-201ENST00000610008 1333 ntBASIC30.14■■■□□ 2.42
COL3A1P02461 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL3A1P02461 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
COL3A1P02461 AL136162.1-201ENST00000607711 1078 ntBASIC30.14■■■□□ 2.42
COL3A1P02461 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC30.14■■■□□ 2.42
COL3A1P02461 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.14■■■□□ 2.41
COL3A1P02461 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL3A1P02461 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.41
COL3A1P02461 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL3A1P02461 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC30.13■■■□□ 2.41
COL3A1P02461 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.13■■■□□ 2.41
COL3A1P02461 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL3A1P02461 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL3A1P02461 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL3A1P02461 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC30.12■■■□□ 2.41
COL3A1P02461 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.12■■■□□ 2.41
COL3A1P02461 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC30.12■■■□□ 2.41
COL3A1P02461 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.12■■■□□ 2.41
COL3A1P02461 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
COL3A1P02461 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
COL3A1P02461 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
COL3A1P02461 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.12■■■□□ 2.41
COL3A1P02461 AC135279.3-201ENST00000610945 1311 ntBASIC30.12■■■□□ 2.41
COL3A1P02461 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.12■■■□□ 2.41
COL3A1P02461 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.12■■■□□ 2.41
COL3A1P02461 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL3A1P02461 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL3A1P02461 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL3A1P02461 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
COL3A1P02461 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL3A1P02461 H19-210ENST00000439725 1929 ntTSL 2 BASIC30.11■■■□□ 2.41
COL3A1P02461 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL3A1P02461 AC009086.3-201ENST00000623486 1008 ntBASIC30.11■■■□□ 2.41
COL3A1P02461 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL3A1P02461 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL3A1P02461 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.1■■■□□ 2.41
COL3A1P02461 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.1■■■□□ 2.41
COL3A1P02461 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL3A1P02461 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30.1■■■□□ 2.41
COL3A1P02461 AC241377.3-202ENST00000626088 1088 ntBASIC30.1■■■□□ 2.41
COL3A1P02461 AC241585.3-202ENST00000628937 1088 ntBASIC30.1■■■□□ 2.41
COL3A1P02461 AC245100.8-202ENST00000629247 1058 ntBASIC30.1■■■□□ 2.41
COL3A1P02461 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC30.1■■■□□ 2.41
COL3A1P02461 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL3A1P02461 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL3A1P02461 PTMA-205ENST00000410064 814 ntTSL 2 BASIC30.09■■■□□ 2.41
COL3A1P02461 AC133561.4-201ENST00000566112 224 ntBASIC30.09■■■□□ 2.41
COL3A1P02461 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC30.09■■■□□ 2.41
COL3A1P02461 AC011298.3-201ENST00000615796 283 ntBASIC30.09■■■□□ 2.41
COL3A1P02461 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL3A1P02461 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL3A1P02461 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC30.08■■■□□ 2.41
COL3A1P02461 SUDS3P1-201ENST00000505831 966 ntBASIC30.07■■■□□ 2.4
COL3A1P02461 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC30.07■■■□□ 2.4
COL3A1P02461 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC30.07■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms