Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC26.33■■□□□ 1.81
CTDNEP1O95476 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CTDNEP1O95476 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.33■■□□□ 1.81
CTDNEP1O95476 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CTDNEP1O95476 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.33■■□□□ 1.81
CTDNEP1O95476 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CTDNEP1O95476 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CTDNEP1O95476 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CTDNEP1O95476 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CTDNEP1O95476 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CTDNEP1O95476 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CTDNEP1O95476 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.32■■□□□ 1.8
CTDNEP1O95476 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CTDNEP1O95476 AC079630.1-202ENST00000618127 1840 ntBASIC26.32■■□□□ 1.8
CTDNEP1O95476 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CTDNEP1O95476 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC26.31■■□□□ 1.8
CTDNEP1O95476 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
CTDNEP1O95476 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
CTDNEP1O95476 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CTDNEP1O95476 AC092028.1-203ENST00000608262 953 ntBASIC26.31■■□□□ 1.8
CTDNEP1O95476 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.31■■□□□ 1.8
CTDNEP1O95476 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDNEP1O95476 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDNEP1O95476 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDNEP1O95476 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTDNEP1O95476 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 Z92544.1-202ENST00000571933 1220 ntBASIC26.3■■□□□ 1.8
CTDNEP1O95476 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 MIR6722-201ENST00000617286 78 ntBASIC26.3■■□□□ 1.8
CTDNEP1O95476 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.3■■□□□ 1.8
CTDNEP1O95476 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.29■■□□□ 1.8
CTDNEP1O95476 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.29■■□□□ 1.8
CTDNEP1O95476 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.29■■□□□ 1.8
CTDNEP1O95476 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CTDNEP1O95476 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDNEP1O95476 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
CTDNEP1O95476 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.28■■□□□ 1.8
CTDNEP1O95476 AC239859.2-201ENST00000444165 318 ntBASIC26.28■■□□□ 1.8
CTDNEP1O95476 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.28■■□□□ 1.8
CTDNEP1O95476 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.28■■□□□ 1.8
CTDNEP1O95476 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CTDNEP1O95476 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDNEP1O95476 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDNEP1O95476 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CTDNEP1O95476 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC26.27■■□□□ 1.8
CTDNEP1O95476 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDNEP1O95476 AC012676.1-201ENST00000574705 1949 ntBASIC26.27■■□□□ 1.8
CTDNEP1O95476 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDNEP1O95476 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CTDNEP1O95476 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDNEP1O95476 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTDNEP1O95476 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDNEP1O95476 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.26■■□□□ 1.79
CTDNEP1O95476 MIR4787-201ENST00000607364 84 ntBASIC26.26■■□□□ 1.79
CTDNEP1O95476 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDNEP1O95476 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CTDNEP1O95476 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CTDNEP1O95476 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDNEP1O95476 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CTDNEP1O95476 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDNEP1O95476 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDNEP1O95476 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDNEP1O95476 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.25■■□□□ 1.79
CTDNEP1O95476 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDNEP1O95476 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.24■■□□□ 1.79
CTDNEP1O95476 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.24■■□□□ 1.79
CTDNEP1O95476 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CTDNEP1O95476 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.24■■□□□ 1.79
CTDNEP1O95476 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CTDNEP1O95476 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CTDNEP1O95476 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
CTDNEP1O95476 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTDNEP1O95476 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.23■■□□□ 1.79
CTDNEP1O95476 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTDNEP1O95476 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.23■■□□□ 1.79
CTDNEP1O95476 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms