Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC28.75■■■□□ 2.19
CACNA1FO60840 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CACNA1FO60840 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
CACNA1FO60840 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC28.75■■■□□ 2.19
CACNA1FO60840 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC28.75■■■□□ 2.19
CACNA1FO60840 FP325331.1-202ENST00000623531 1380 ntBASIC28.75■■■□□ 2.19
CACNA1FO60840 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CACNA1FO60840 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CACNA1FO60840 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CACNA1FO60840 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CACNA1FO60840 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
CACNA1FO60840 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.74■■■□□ 2.19
CACNA1FO60840 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
CACNA1FO60840 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CACNA1FO60840 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC28.74■■■□□ 2.19
CACNA1FO60840 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC28.74■■■□□ 2.19
CACNA1FO60840 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.74■■■□□ 2.19
CACNA1FO60840 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC28.73■■■□□ 2.19
CACNA1FO60840 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.73■■■□□ 2.19
CACNA1FO60840 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CACNA1FO60840 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.72■■■□□ 2.19
CACNA1FO60840 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CACNA1FO60840 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC28.72■■■□□ 2.19
CACNA1FO60840 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CACNA1FO60840 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC28.71■■■□□ 2.19
CACNA1FO60840 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC28.71■■■□□ 2.19
CACNA1FO60840 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC28.71■■■□□ 2.19
CACNA1FO60840 AC006455.2-201ENST00000429931 906 ntBASIC28.71■■■□□ 2.19
CACNA1FO60840 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC28.71■■■□□ 2.19
CACNA1FO60840 H19-210ENST00000439725 1929 ntTSL 2 BASIC28.71■■■□□ 2.19
CACNA1FO60840 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
CACNA1FO60840 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
CACNA1FO60840 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CACNA1FO60840 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC28.7■■■□□ 2.19
CACNA1FO60840 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC28.7■■■□□ 2.19
CACNA1FO60840 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC28.7■■■□□ 2.19
CACNA1FO60840 AC011298.3-201ENST00000615796 283 ntBASIC28.7■■■□□ 2.19
CACNA1FO60840 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CACNA1FO60840 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CACNA1FO60840 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CACNA1FO60840 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.69■■■□□ 2.18
CACNA1FO60840 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CACNA1FO60840 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.69■■■□□ 2.18
CACNA1FO60840 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
CACNA1FO60840 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CACNA1FO60840 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC28.68■■■□□ 2.18
CACNA1FO60840 AC092068.2-201ENST00000590491 1708 ntBASIC28.68■■■□□ 2.18
CACNA1FO60840 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CACNA1FO60840 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CACNA1FO60840 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.67■■■□□ 2.18
CACNA1FO60840 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CACNA1FO60840 AC096631.2-201ENST00000436136 790 ntBASIC28.67■■■□□ 2.18
CACNA1FO60840 AC099791.2-201ENST00000605725 427 ntBASIC28.67■■■□□ 2.18
CACNA1FO60840 AC106739.1-201ENST00000617035 715 ntBASIC28.67■■■□□ 2.18
CACNA1FO60840 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
CACNA1FO60840 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.66■■■□□ 2.18
CACNA1FO60840 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC28.66■■■□□ 2.18
CACNA1FO60840 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.66■■■□□ 2.18
CACNA1FO60840 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
CACNA1FO60840 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC28.66■■■□□ 2.18
CACNA1FO60840 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1FO60840 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.65■■■□□ 2.18
CACNA1FO60840 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.65■■■□□ 2.18
CACNA1FO60840 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.65■■■□□ 2.18
CACNA1FO60840 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC28.65■■■□□ 2.18
CACNA1FO60840 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.65■■■□□ 2.18
CACNA1FO60840 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CACNA1FO60840 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CACNA1FO60840 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CACNA1FO60840 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.64■■■□□ 2.18
CACNA1FO60840 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.64■■■□□ 2.18
CACNA1FO60840 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
CACNA1FO60840 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC28.64■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms