Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
SDCBPO00560 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.12■□□□□ 0.65
SDCBPO00560 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 TSPY13P-201ENST00000338964 914 ntBASIC19.12■□□□□ 0.65
SDCBPO00560 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SDCBPO00560 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.12■□□□□ 0.65
SDCBPO00560 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SDCBPO00560 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDCBPO00560 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
SDCBPO00560 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.11■□□□□ 0.65
SDCBPO00560 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDCBPO00560 AC019171.1-201ENST00000601251 1056 ntBASIC19.11■□□□□ 0.65
SDCBPO00560 AC012354.3-201ENST00000623734 483 ntBASIC19.11■□□□□ 0.65
SDCBPO00560 PKD1P6-201ENST00000343738 4769 ntBASIC19.11■□□□□ 0.65
SDCBPO00560 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.1■□□□□ 0.65
SDCBPO00560 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SDCBPO00560 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.1■□□□□ 0.65
SDCBPO00560 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.1■□□□□ 0.65
SDCBPO00560 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDCBPO00560 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 AC022616.5-201ENST00000518796 181 ntBASIC19.09■□□□□ 0.65
SDCBPO00560 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.09■□□□□ 0.65
SDCBPO00560 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SDCBPO00560 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.09■□□□□ 0.65
SDCBPO00560 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDCBPO00560 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SDCBPO00560 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SDCBPO00560 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.08■□□□□ 0.65
SDCBPO00560 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SDCBPO00560 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.08■□□□□ 0.65
SDCBPO00560 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.08■□□□□ 0.64
SDCBPO00560 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SDCBPO00560 AC074183.2-201ENST00000623112 922 ntBASIC19.08■□□□□ 0.64
SDCBPO00560 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SDCBPO00560 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDCBPO00560 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SDCBPO00560 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.07■□□□□ 0.64
SDCBPO00560 AC011551.1-201ENST00000614101 683 ntBASIC19.07■□□□□ 0.64
SDCBPO00560 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SDCBPO00560 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.07■□□□□ 0.64
SDCBPO00560 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SDCBPO00560 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDCBPO00560 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.06■□□□□ 0.64
SDCBPO00560 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 GUSBP5-202ENST00000510805 1989 ntBASIC19.06■□□□□ 0.64
SDCBPO00560 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
SDCBPO00560 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SDCBPO00560 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.06■□□□□ 0.64
SDCBPO00560 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.06■□□□□ 0.64
SDCBPO00560 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SDCBPO00560 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDCBPO00560 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.06■□□□□ 0.64
SDCBPO00560 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms