Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MBD3L4A6NDZ8 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3L4A6NDZ8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3L4A6NDZ8 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MBD3L4A6NDZ8 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MBD3L4A6NDZ8 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 AC008764.7-201ENST00000593779 1081 ntBASIC20■□□□□ 0.79
MBD3L4A6NDZ8 pRNA.6-201ENST00000610482 90 ntBASIC20■□□□□ 0.79
MBD3L4A6NDZ8 pRNA.5-201ENST00000612139 90 ntBASIC20■□□□□ 0.79
MBD3L4A6NDZ8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 pRNA.11-201ENST00000618423 90 ntBASIC20■□□□□ 0.79
MBD3L4A6NDZ8 pRNA.13-201ENST00000619112 90 ntBASIC20■□□□□ 0.79
MBD3L4A6NDZ8 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20■□□□□ 0.79
MBD3L4A6NDZ8 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 BX842568.3-201ENST00000418104 571 ntBASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 RARRES2P6-201ENST00000567333 442 ntBASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
MBD3L4A6NDZ8 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 AC099791.1-201ENST00000416440 715 ntBASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MBD3L4A6NDZ8 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 AC233992.3-201ENST00000607491 485 ntBASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MBD3L4A6NDZ8 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.96■□□□□ 0.79
MBD3L4A6NDZ8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms