Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 AC126544.1-201ENST00000580842 1059 ntBASIC39.81■■■■□ 3.96
CCDC88BA6NC98 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC39.8■■■■□ 3.96
CCDC88BA6NC98 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
CCDC88BA6NC98 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC39.8■■■■□ 3.96
CCDC88BA6NC98 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
CCDC88BA6NC98 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC39.8■■■■□ 3.96
CCDC88BA6NC98 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC39.79■■■■□ 3.96
CCDC88BA6NC98 IGHV3-19-201ENST00000521488 291 ntBASIC39.79■■■■□ 3.96
CCDC88BA6NC98 ALDH1A3-203ENST00000557963 1670 ntBASIC39.79■■■■□ 3.96
CCDC88BA6NC98 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC39.79■■■■□ 3.96
CCDC88BA6NC98 EI24-204ENST00000527235 1625 ntTSL 5 BASIC39.78■■■■□ 3.96
CCDC88BA6NC98 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC39.78■■■■□ 3.96
CCDC88BA6NC98 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC39.78■■■■□ 3.96
CCDC88BA6NC98 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC39.78■■■■□ 3.96
CCDC88BA6NC98 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC39.77■■■■□ 3.96
CCDC88BA6NC98 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC39.76■■■■□ 3.96
CCDC88BA6NC98 AC141586.4-201ENST00000624558 1573 ntBASIC39.76■■■■□ 3.96
CCDC88BA6NC98 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC39.76■■■■□ 3.96
CCDC88BA6NC98 AC145676.1-201ENST00000514988 2004 ntBASIC39.76■■■■□ 3.96
CCDC88BA6NC98 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC39.76■■■■□ 3.95
CCDC88BA6NC98 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC39.75■■■■□ 3.95
CCDC88BA6NC98 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC39.74■■■■□ 3.95
CCDC88BA6NC98 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC39.74■■■■□ 3.95
CCDC88BA6NC98 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC39.74■■■■□ 3.95
CCDC88BA6NC98 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC39.74■■■■□ 3.95
CCDC88BA6NC98 AC012414.1-201ENST00000556676 535 ntBASIC39.74■■■■□ 3.95
CCDC88BA6NC98 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
CCDC88BA6NC98 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 AICDA-202ENST00000537228 667 ntTSL 5 BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC39.72■■■■□ 3.95
CCDC88BA6NC98 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 AC123595.1-201ENST00000440769 1046 ntBASIC39.71■■■■□ 3.95
CCDC88BA6NC98 MIR6084-201ENST00000622012 110 ntBASIC39.71■■■■□ 3.95
CCDC88BA6NC98 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
CCDC88BA6NC98 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC39.7■■■■□ 3.95
CCDC88BA6NC98 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC39.7■■■■□ 3.95
CCDC88BA6NC98 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC39.7■■■■□ 3.95
CCDC88BA6NC98 AL137784.2-201ENST00000607332 1000 ntBASIC39.7■■■■□ 3.95
CCDC88BA6NC98 AL358852.1-201ENST00000623174 1268 ntBASIC39.7■■■■□ 3.95
CCDC88BA6NC98 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC39.7■■■■□ 3.95
CCDC88BA6NC98 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC39.7■■■■□ 3.95
CCDC88BA6NC98 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC39.69■■■■□ 3.94
CCDC88BA6NC98 MIR572-201ENST00000384983 95 ntBASIC39.69■■■■□ 3.94
CCDC88BA6NC98 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
CCDC88BA6NC98 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC39.69■■■■□ 3.94
CCDC88BA6NC98 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
CCDC88BA6NC98 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC39.69■■■■□ 3.94
CCDC88BA6NC98 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 NME4-202ENST00000382940 766 ntTSL 3 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 NME4-211ENST00000620944 1193 ntTSL 2 BASIC39.68■■■■□ 3.94
CCDC88BA6NC98 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC39.67■■■■□ 3.94
CCDC88BA6NC98 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC39.67■■■■□ 3.94
CCDC88BA6NC98 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC39.67■■■■□ 3.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms