Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AL035414.1-201ENST00000451327 857 ntBASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 CR392039.2-201ENST00000623182 509 ntBASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LINC02486-201ENST00000604157 3000 ntBASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 AC110048.1-201ENST00000604293 2157 ntBASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC28BQ9BUN5 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC098850.1-201ENST00000419919 790 ntBASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC009486.1-201ENST00000569860 813 ntBASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC28BQ9BUN5 WDR88-203ENST00000592765 651 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms