Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC8.83□□□□□ -1
LINC00643Q86TS7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC8.83□□□□□ -1
LINC00643Q86TS7 REXO1L10P-201ENST00000615707 1290 ntBASIC8.83□□□□□ -1
LINC00643Q86TS7 REXO1L12P-201ENST00000622156 912 ntBASIC8.83□□□□□ -1
LINC00643Q86TS7 CR392039.2-201ENST00000623182 509 ntBASIC8.83□□□□□ -1
LINC00643Q86TS7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 PCDHGA7-202ENST00000617050 3262 ntAPPRIS P1 BASIC8.83□□□□□ -1
LINC00643Q86TS7 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ANXA11-205ENST00000438331 6965 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 CSNK1G1-209ENST00000634811 2592 ntAPPRIS ALT1 TSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 ADCY5-201ENST00000309879 2841 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 LAMB1-203ENST00000393560 2806 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SLC26A4-201ENST00000265715 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ATP6V0A4-203ENST00000393054 3090 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 PKP1-201ENST00000263946 5447 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 PRIMA1-202ENST00000393140 3711 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 LINC02052-202ENST00000427914 2285 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 LRRC32-203ENST00000407242 4311 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ACSM5-201ENST00000331849 2796 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SNHG20-202ENST00000434411 2143 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 PRAMENP-201ENST00000337471 3038 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 AL162727.1-201ENST00000437712 3043 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 MPP2-221ENST00000625880 4668 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 CARMN-210ENST00000602964 8398 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 SEPT8-210ENST00000448933 4270 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 Z97192.3-201ENST00000420902 2975 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 LINC01141-203ENST00000426428 2993 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 CYP4F3-206ENST00000591058 2983 ntAPPRIS ALT1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 KIF14-201ENST00000367350 7274 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 AL360270.3-201ENST00000609118 1348 ntBASIC8.82□□□□□ -1
LINC00643Q86TS7 DNM3-208ENST00000627582 7625 ntAPPRIS ALT1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 MOG-225ENST00000431798 1814 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ASAP3-201ENST00000336689 4050 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 TACC2-229ENST00000515603 9101 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 IP6K2-221ENST00000449610 1673 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 DNASE1L1-205ENST00000369809 3008 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 TP53TG3B-201ENST00000341305 2034 ntAPPRIS P2 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC8.82□□□□□ -1
LINC00643Q86TS7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 RN7SL606P-201ENST00000472779 293 ntBASIC8.82□□□□□ -1
LINC00643Q86TS7 TRMT112-205ENST00000539854 659 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC8.82□□□□□ -1
LINC00643Q86TS7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 RN7SL471P-201ENST00000580476 299 ntBASIC8.82□□□□□ -1
LINC00643Q86TS7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC8.82□□□□□ -1
LINC00643Q86TS7 CREBBP-202ENST00000382070 7598 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 TGOLN2-202ENST00000377386 6489 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 GPR37L1-201ENST00000367282 6588 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 IFNAR2-205ENST00000404220 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 ZC2HC1C-203ENST00000524913 4283 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 ADPRH-201ENST00000357003 3439 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
LINC00643Q86TS7 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 NCBP2L-202ENST00000639756 1953 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ZMYM5-201ENST00000337963 3268 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
LINC00643Q86TS7 SMARCAL1-201ENST00000357276 3271 ntAPPRIS P2 TSL 2 BASIC8.82□□□□□ -1
LINC00643Q86TS7 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms