Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RNU1-80P-201ENST00000459500 161 ntBASIC17.62■□□□□ 0.41
RC3H1Q5TC82 AC147876.1-201ENST00000504408 322 ntBASIC17.62■□□□□ 0.41
RC3H1Q5TC82 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 AL513477.1-201ENST00000602865 2407 ntBASIC17.62■□□□□ 0.41
RC3H1Q5TC82 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
RC3H1Q5TC82 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 CCL19-202ENST00000378800 414 ntTSL 2 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PHBP10-201ENST00000416467 784 ntBASIC17.61■□□□□ 0.41
RC3H1Q5TC82 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 AC104212.2-201ENST00000478813 628 ntBASIC17.61■□□□□ 0.41
RC3H1Q5TC82 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 URB1-AS1-201ENST00000534991 831 ntBASIC17.61■□□□□ 0.41
RC3H1Q5TC82 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RC3H1Q5TC82 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 RNA5SP491-201ENST00000362936 118 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AIG1-203ENST00000367596 559 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 SNU13-204ENST00000402458 462 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 RPL18AP16-201ENST00000424057 531 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 CCND3P1-201ENST00000438347 580 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 KRT19P4-201ENST00000443208 943 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 BX322534.1-201ENST00000635574 241 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 AC215524.1-201ENST00000635696 241 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 MEP1AP1-201ENST00000636082 1097 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 LILRP2-202ENST00000413572 1383 ntBASIC17.6■□□□□ 0.41
RC3H1Q5TC82 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 DDC-204ENST00000426377 1700 ntTSL 3 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RC3H1Q5TC82 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms