Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
SRP9P49458 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SRP9P49458 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SRP9P49458 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SRP9P49458 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.82□□□□□ -0.36
SRP9P49458 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
SRP9P49458 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.82□□□□□ -0.36
SRP9P49458 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.82□□□□□ -0.36
SRP9P49458 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 ENPP7P14-201ENST00000621765 1040 ntBASIC12.82□□□□□ -0.36
SRP9P49458 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
SRP9P49458 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC12.82□□□□□ -0.36
SRP9P49458 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
SRP9P49458 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.82□□□□□ -0.36
SRP9P49458 HSPA8P5-201ENST00000456928 2069 ntBASIC12.82□□□□□ -0.36
SRP9P49458 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.82□□□□□ -0.36
SRP9P49458 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 AL023775.1-201ENST00000454907 1746 ntBASIC12.82□□□□□ -0.36
SRP9P49458 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 OS9-206ENST00000435406 2346 ntTSL 2 BASIC12.82□□□□□ -0.36
SRP9P49458 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRP9P49458 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 AP002761.4-201ENST00000565433 3361 ntBASIC12.81□□□□□ -0.36
SRP9P49458 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SRP9P49458 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SRP9P49458 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 AL138709.1-201ENST00000614840 1693 ntBASIC12.81□□□□□ -0.36
SRP9P49458 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.81□□□□□ -0.36
SRP9P49458 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SRP9P49458 FTH1P14-201ENST00000482930 551 ntBASIC12.81□□□□□ -0.36
SRP9P49458 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC12.81□□□□□ -0.36
SRP9P49458 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.81□□□□□ -0.36
SRP9P49458 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC12.81□□□□□ -0.36
SRP9P49458 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.81□□□□□ -0.36
SRP9P49458 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRP9P49458 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.81□□□□□ -0.36
SRP9P49458 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms