Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HLA-C-210ENST00000640219 976 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGA1P17096 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HMGA1P17096 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HMGA1P17096 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 AC015909.5-201ENST00000624336 2266 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGA1P17096 AC097065.1-201ENST00000425737 517 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 RN7SL23P-201ENST00000484055 275 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 RN7SL818P-201ENST00000485099 259 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HMGA1P17096 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 NAMA-206ENST00000605377 509 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 RN7SL725P-201ENST00000606439 259 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 AL031673.1-201ENST00000611460 466 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 BAP1-211ENST00000615113 489 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 AC127024.7-201ENST00000625101 200 ntBASIC14.67□□□□□ -0.06
HMGA1P17096 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HMGA1P17096 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGA1P17096 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGA1P17096 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
HMGA1P17096 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 AC021305.1-201ENST00000520656 1514 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 AC139749.1-202ENST00000617529 3139 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.66□□□□□ -0.06
HMGA1P17096 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 AC114501.1-201ENST00000445949 172 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 AC006529.1-201ENST00000459978 637 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 AC025186.1-201ENST00000478174 870 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 CD81-209ENST00000492627 886 ntTSL 3 BASIC14.66□□□□□ -0.06
HMGA1P17096 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.66□□□□□ -0.06
HMGA1P17096 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGA1P17096 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC14.66□□□□□ -0.06
HMGA1P17096 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 LINC00431-202ENST00000636375 159 ntBASIC14.66□□□□□ -0.06
HMGA1P17096 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms