Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 MIR602-201ENST00000384960 98 ntBASIC14.33□□□□□ -0.12
VCANP13611 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC14.33□□□□□ -0.12
VCANP13611 GOLGA2-210ENST00000490628 428 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 MIR5091-201ENST00000578707 93 ntBASIC14.33□□□□□ -0.12
VCANP13611 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.33□□□□□ -0.12
VCANP13611 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC14.33□□□□□ -0.12
VCANP13611 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.33□□□□□ -0.12
VCANP13611 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 TUBAP-201ENST00000425085 1352 ntBASIC14.33□□□□□ -0.12
VCANP13611 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 FAM90A27P-201ENST00000593323 1370 ntBASIC14.33□□□□□ -0.12
VCANP13611 FAM90A28P-202ENST00000597191 1374 ntBASIC14.33□□□□□ -0.12
VCANP13611 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC14.33□□□□□ -0.12
VCANP13611 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.33□□□□□ -0.12
VCANP13611 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VCANP13611 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 AL031577.1-201ENST00000339867 399 ntBASIC14.33□□□□□ -0.12
VCANP13611 AC104115.1-201ENST00000484005 623 ntBASIC14.33□□□□□ -0.12
VCANP13611 RN7SL2-201ENST00000490232 300 ntBASIC14.33□□□□□ -0.12
VCANP13611 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VCANP13611 RN7SL4P-201ENST00000584058 295 ntBASIC14.33□□□□□ -0.12
VCANP13611 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC14.33□□□□□ -0.12
VCANP13611 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC14.33□□□□□ -0.12
VCANP13611 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VCANP13611 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
VCANP13611 ABCA1-201ENST00000374733 923 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 AC073869.1-201ENST00000415574 2762 ntBASIC14.32□□□□□ -0.12
VCANP13611 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 PRDX3P2-201ENST00000447051 611 ntBASIC14.32□□□□□ -0.12
VCANP13611 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC14.32□□□□□ -0.12
VCANP13611 TLE2-205ENST00000586422 389 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 AC245884.8-201ENST00000599382 880 ntBASIC14.32□□□□□ -0.12
VCANP13611 ZNF415-221ENST00000600574 563 ntTSL 3 BASIC14.32□□□□□ -0.12
VCANP13611 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 AC023824.1-201ENST00000562945 2975 ntBASIC14.32□□□□□ -0.12
VCANP13611 AP005117.1-202ENST00000581724 1908 ntBASIC14.32□□□□□ -0.12
VCANP13611 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.32□□□□□ -0.12
VCANP13611 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.32□□□□□ -0.12
VCANP13611 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 PTAFR-201ENST00000305392 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.32□□□□□ -0.12
VCANP13611 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VCANP13611 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 NAA10-205ENST00000393712 908 ntTSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 CAPG-204ENST00000409724 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 AC073316.2-201ENST00000414126 418 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.31□□□□□ -0.12
VCANP13611 RN7SL479P-201ENST00000472003 300 ntBASIC14.31□□□□□ -0.12
VCANP13611 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 AL356740.1-201ENST00000602192 1297 ntBASIC14.31□□□□□ -0.12
VCANP13611 AC108002.3-201ENST00000612629 503 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 AL137028.2-201ENST00000614601 256 ntBASIC14.31□□□□□ -0.12
VCANP13611 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 EGLN3-205ENST00000547327 2849 ntBASIC14.31□□□□□ -0.12
VCANP13611 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC14.31□□□□□ -0.12
VCANP13611 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 TPI1P2-201ENST00000491343 752 ntBASIC14.31□□□□□ -0.12
VCANP13611 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms