Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 TUBB8P4-201ENST00000511806 1324 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC239868.1-201ENST00000369385 493 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 OR2R1P-201ENST00000441404 914 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 RN7SL720P-201ENST00000488178 304 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 RHOQP1-201ENST00000555758 579 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC105129.2-201ENST00000559536 390 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 AC106872.11-201ENST00000605838 421 ntBASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A3BPQ9Y5P4 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 LAP3P2-201ENST00000454686 1454 ntBASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 IMP3P2-201ENST00000489760 475 ntBASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PGAM1P5-201ENST00000548011 764 ntBASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AC010327.5-201ENST00000586923 3061 ntBASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 AL022313.4-201ENST00000562756 2046 ntBASIC16.04■□□□□ 0.16
COL4A3BPQ9Y5P4 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms