Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 DUX4L50-201ENST00000455245 715 ntBASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 AC022447.6-201ENST00000515522 438 ntBASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 MIR6842-201ENST00000612539 65 ntBASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC3Q9BQI4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 RN7SL530P-201ENST00000485097 298 ntBASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 MIR4522-201ENST00000584932 87 ntBASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 CICP24-201ENST00000605464 2705 ntBASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC3Q9BQI4 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 AC006504.5-208ENST00000588784 2401 ntBASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 AL354702.1-201ENST00000442006 1960 ntBASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms