Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 AL122018.1-201ENST00000446607 2310 ntBASIC12.84□□□□□ -0.35
H3F3AP84243 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.84□□□□□ -0.35
H3F3AP84243 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 EIF4HP1-201ENST00000453115 687 ntBASIC12.84□□□□□ -0.35
H3F3AP84243 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 AL512310.5-201ENST00000551999 515 ntBASIC12.84□□□□□ -0.35
H3F3AP84243 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.84□□□□□ -0.35
H3F3AP84243 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 KRT8P24-201ENST00000560290 1559 ntBASIC12.84□□□□□ -0.35
H3F3AP84243 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.84□□□□□ -0.35
H3F3AP84243 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 SHMT1P1-201ENST00000419974 1312 ntBASIC12.84□□□□□ -0.35
H3F3AP84243 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
H3F3AP84243 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
H3F3AP84243 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
H3F3AP84243 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
H3F3AP84243 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 AC005840.4-201ENST00000541242 2494 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
H3F3AP84243 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.83□□□□□ -0.36
H3F3AP84243 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
H3F3AP84243 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC12.83□□□□□ -0.36
H3F3AP84243 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 TSPY25P-201ENST00000429463 745 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 AC011742.3-201ENST00000439053 820 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 SCARNA20.5-201ENST00000516991 142 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.83□□□□□ -0.36
H3F3AP84243 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.83□□□□□ -0.36
H3F3AP84243 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.83□□□□□ -0.36
H3F3AP84243 MIR4525-201ENST00000580000 75 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.83□□□□□ -0.36
H3F3AP84243 AL805961.1-203ENST00000641078 1258 ntBASIC12.83□□□□□ -0.36
H3F3AP84243 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
H3F3AP84243 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms