Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.03■□□□□ -0
HDAC4P56524 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HDAC4P56524 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.03■□□□□ -0
HDAC4P56524 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HDAC4P56524 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.02■□□□□ -0
HDAC4P56524 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 AC107918.4-201ENST00000641966 3141 ntBASIC15.02■□□□□ -0
HDAC4P56524 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.02■□□□□ -0
HDAC4P56524 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.02■□□□□ -0
HDAC4P56524 USP17L6P-201ENST00000382470 1197 ntBASIC15.02■□□□□ -0
HDAC4P56524 BRWD1P1-201ENST00000401091 371 ntBASIC15.02■□□□□ -0
HDAC4P56524 ACTBP11-201ENST00000436287 1126 ntBASIC15.02■□□□□ -0
HDAC4P56524 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HDAC4P56524 SERPINA13P-202ENST00000478994 924 ntBASIC15.02■□□□□ -0
HDAC4P56524 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.02■□□□□ -0
HDAC4P56524 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.02■□□□□ -0
HDAC4P56524 AC126915.1-201ENST00000522847 1038 ntBASIC15.02■□□□□ -0
HDAC4P56524 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.02■□□□□ -0
HDAC4P56524 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 RN7SL163P-201ENST00000583100 276 ntBASIC15.02■□□□□ -0
HDAC4P56524 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.02■□□□□ -0
HDAC4P56524 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.02■□□□□ -0
HDAC4P56524 AC092299.1-201ENST00000632679 757 ntBASIC15.02■□□□□ -0
HDAC4P56524 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.02□□□□□ -0.01
HDAC4P56524 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
HDAC4P56524 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.02□□□□□ -0.01
HDAC4P56524 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
HDAC4P56524 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.02□□□□□ -0.01
HDAC4P56524 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
HDAC4P56524 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.02□□□□□ -0.01
HDAC4P56524 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.02□□□□□ -0.01
HDAC4P56524 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.02□□□□□ -0.01
HDAC4P56524 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC15.02□□□□□ -0.01
HDAC4P56524 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HDAC4P56524 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
HDAC4P56524 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 AHCYP4-201ENST00000419201 1315 ntBASIC15.01□□□□□ -0.01
HDAC4P56524 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.01□□□□□ -0.01
HDAC4P56524 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.01□□□□□ -0.01
HDAC4P56524 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms