Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 STK3-218ENST00000617590 2485 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TUBB8P4-201ENST00000511806 1324 ntBASIC11.03□□□□□ -0.64
HLA-DMBP28068 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DMBP28068 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DMBP28068 AL022313.4-201ENST00000562756 2046 ntBASIC11.02□□□□□ -0.64
HLA-DMBP28068 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
HLA-DMBP28068 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DMBP28068 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DMBP28068 COL6A4P2-202ENST00000504443 2753 ntBASIC11.02□□□□□ -0.64
HLA-DMBP28068 CICP20-201ENST00000443330 2801 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC004945.1-201ENST00000416738 983 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 KRT223P-202ENST00000449164 1292 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC025279.2-201ENST00000569730 653 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 NAA38-206ENST00000576384 424 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC002472.3-201ENST00000640124 621 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AC015909.5-201ENST00000624336 2266 ntBASIC11.02□□□□□ -0.65
HLA-DMBP28068 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DMBP28068 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DMBP28068 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DMBP28068 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DMBP28068 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms