Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCNAP12004 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCNAP12004 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCNAP12004 HSPA8P5-201ENST00000456928 2069 ntBASIC14.1□□□□□ -0.15
PCNAP12004 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCNAP12004 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCNAP12004 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
PCNAP12004 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.09□□□□□ -0.15
PCNAP12004 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
PCNAP12004 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PCNAP12004 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PCNAP12004 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 AL035414.1-201ENST00000451327 857 ntBASIC14.09□□□□□ -0.15
PCNAP12004 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.09□□□□□ -0.15
PCNAP12004 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.09□□□□□ -0.15
PCNAP12004 AC023310.1-201ENST00000554836 735 ntBASIC14.09□□□□□ -0.15
PCNAP12004 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.09□□□□□ -0.15
PCNAP12004 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
PCNAP12004 AL162274.1-201ENST00000617191 1098 ntBASIC14.09□□□□□ -0.15
PCNAP12004 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.09□□□□□ -0.15
PCNAP12004 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.09□□□□□ -0.15
PCNAP12004 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 AC020910.6-201ENST00000623084 1459 ntBASIC14.09□□□□□ -0.15
PCNAP12004 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.09□□□□□ -0.15
PCNAP12004 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PCNAP12004 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.09□□□□□ -0.15
PCNAP12004 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCNAP12004 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
PCNAP12004 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCNAP12004 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCNAP12004 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.08□□□□□ -0.15
PCNAP12004 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
PCNAP12004 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCNAP12004 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCNAP12004 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
PCNAP12004 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCNAP12004 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
PCNAP12004 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
PCNAP12004 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 MIR326-201ENST00000362220 95 ntBASIC14.08□□□□□ -0.16
PCNAP12004 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.08□□□□□ -0.16
PCNAP12004 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 HIST2H2BB-201ENST00000449108 381 ntBASIC14.08□□□□□ -0.16
PCNAP12004 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 AC104989.1-201ENST00000519711 778 ntBASIC14.08□□□□□ -0.16
PCNAP12004 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.08□□□□□ -0.16
PCNAP12004 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
PCNAP12004 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 AC079316.1-201ENST00000548397 411 ntBASIC14.08□□□□□ -0.16
PCNAP12004 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 AC027237.1-201ENST00000560942 655 ntBASIC14.08□□□□□ -0.16
PCNAP12004 C2orf69P2-201ENST00000562032 1123 ntBASIC14.08□□□□□ -0.16
PCNAP12004 AC106886.1-201ENST00000568660 600 ntBASIC14.08□□□□□ -0.16
PCNAP12004 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.08□□□□□ -0.16
PCNAP12004 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.08□□□□□ -0.16
PCNAP12004 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms