Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 AMT-256ENST00000638063 1783 ntTSL 5 BASIC16.82■□□□□ 0.28
HLA-DOAP06340 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DOAP06340 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DOAP06340 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AC090502.4-201ENST00000551714 1386 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AL022313.4-201ENST00000562756 2046 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AL590824.1-201ENST00000403828 1349 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 USP17L6P-201ENST00000382470 1197 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 LINC00265-2P-201ENST00000413372 782 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 DPY19L2P5-201ENST00000456300 331 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 IGHV3-37-201ENST00000518544 340 ntBASIC16.81■□□□□ 0.28
HLA-DOAP06340 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DOAP06340 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DOAP06340 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 AC015802.1-201ENST00000588104 1449 ntBASIC16.8■□□□□ 0.28
HLA-DOAP06340 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 GOLGA2P8-201ENST00000505201 779 ntBASIC16.8■□□□□ 0.28
HLA-DOAP06340 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 AC007250.1-201ENST00000608934 338 ntBASIC16.8■□□□□ 0.28
HLA-DOAP06340 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 AP001267.2-201ENST00000532619 2086 ntBASIC16.8■□□□□ 0.28
HLA-DOAP06340 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DOAP06340 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DOAP06340 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms