Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 AL356585.2-201ENST00000625078 2396 ntBASIC14.47□□□□□ -0.09
DKK3Q9UBP4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 ST20-AS1-201ENST00000560255 4223 ntBASIC14.47□□□□□ -0.09
DKK3Q9UBP4 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
DKK3Q9UBP4 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 IMP3P2-201ENST00000489760 475 ntBASIC14.46□□□□□ -0.09
DKK3Q9UBP4 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 PHBP15-201ENST00000574228 665 ntBASIC14.46□□□□□ -0.09
DKK3Q9UBP4 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 LINC01783-202ENST00000614408 828 ntBASIC14.46□□□□□ -0.09
DKK3Q9UBP4 BX284668.2-205ENST00000619677 828 ntBASIC14.46□□□□□ -0.09
DKK3Q9UBP4 AC079336.7-201ENST00000623428 1078 ntBASIC14.46□□□□□ -0.09
DKK3Q9UBP4 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DKK3Q9UBP4 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 INTS4P1-203ENST00000641008 3683 ntBASIC14.46□□□□□ -0.1
DKK3Q9UBP4 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DKK3Q9UBP4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 DUX4L50-201ENST00000455245 715 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC116345.2-201ENST00000512837 523 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 RTN3P1-201ENST00000536295 711 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC105129.2-201ENST00000559536 390 ntBASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
DKK3Q9UBP4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms