Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RFNG-202ENST00000429557 994 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RN7SL440P-201ENST00000577855 343 ntBASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CLPP-205ENST00000596605 646 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AF013593.1-201ENST00000458074 1487 ntBASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AL137244.1-201ENST00000422931 865 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 MIR6893-201ENST00000613458 69 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AL031587.5-201ENST00000624344 1849 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SDCBP2P1-201ENST00000416115 614 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC114812.4-201ENST00000506676 757 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC015818.3-201ENST00000583797 589 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC020922.4-201ENST00000621389 339 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 PRDX3P2-201ENST00000447051 611 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC084262.1-201ENST00000567818 751 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 NAT9-219ENST00000582524 573 ntTSL 4 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 ACTBP9-201ENST00000587663 1099 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AL512324.3-201ENST00000619383 882 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC008622.3-201ENST00000621170 600 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 RN7SL684P-201ENST00000465665 294 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 MIR5091-201ENST00000578707 93 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 STK25-235ENST00000543554 2556 ntTSL 2 BASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 RCC2P1-201ENST00000452257 1476 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 AC020910.6-201ENST00000623084 1459 ntBASIC9.24□□□□□ -0.93
VPS13DQ5THJ4 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC9.23□□□□□ -0.93
VPS13DQ5THJ4 AP000437.1-201ENST00000624057 2085 ntBASIC9.23□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms