Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC15.91■□□□□ 0.14
TM4SF4P48230 CRIP1P2-201ENST00000425396 228 ntBASIC15.91■□□□□ 0.14
TM4SF4P48230 NDUFB2P1-201ENST00000506966 295 ntBASIC15.91■□□□□ 0.14
TM4SF4P48230 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC15.91■□□□□ 0.14
TM4SF4P48230 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC15.91■□□□□ 0.14
TM4SF4P48230 NAT9-204ENST00000578822 839 ntTSL 3 BASIC15.91■□□□□ 0.14
TM4SF4P48230 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC15.91■□□□□ 0.14
TM4SF4P48230 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC15.91■□□□□ 0.14
TM4SF4P48230 AC137723.2-201ENST00000623540 398 ntBASIC15.91■□□□□ 0.14
TM4SF4P48230 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 PTN-202ENST00000393083 1599 ntTSL 5 BASIC15.91■□□□□ 0.14
TM4SF4P48230 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TM4SF4P48230 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 AL118508.1-201ENST00000613502 2345 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 GUCY2EP-203ENST00000531117 1918 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 RFNG-202ENST00000429557 994 ntTSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 AC113398.1-201ENST00000464124 406 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 AC120498.5-201ENST00000561757 299 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 AC136475.7-201ENST00000602949 592 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
TM4SF4P48230 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TM4SF4P48230 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 SIGLEC20P-201ENST00000595243 1311 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 KRT8P25-201ENST00000473150 1456 ntBASIC15.9■□□□□ 0.14
TM4SF4P48230 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.9■□□□□ 0.14
TM4SF4P48230 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TM4SF4P48230 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.89■□□□□ 0.13
TM4SF4P48230 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC15.89■□□□□ 0.13
TM4SF4P48230 SDCBP2P1-201ENST00000416115 614 ntBASIC15.89■□□□□ 0.13
TM4SF4P48230 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC15.89■□□□□ 0.13
TM4SF4P48230 AC005722.1-201ENST00000431878 964 ntBASIC15.89■□□□□ 0.13
TM4SF4P48230 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.89■□□□□ 0.13
TM4SF4P48230 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 TMA16-204ENST00000508268 608 ntTSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
TM4SF4P48230 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC15.89■□□□□ 0.13
TM4SF4P48230 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC15.89■□□□□ 0.13
TM4SF4P48230 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC15.89■□□□□ 0.13
TM4SF4P48230 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC15.89■□□□□ 0.13
TM4SF4P48230 AC022001.3-201ENST00000606330 596 ntBASIC15.89■□□□□ 0.13
TM4SF4P48230 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
TM4SF4P48230 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC15.89■□□□□ 0.13
TM4SF4P48230 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.89■□□□□ 0.13
TM4SF4P48230 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC15.89■□□□□ 0.13
TM4SF4P48230 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TM4SF4P48230 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms