Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC23.17■■□□□ 1.3
CUX1P39880 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC23.17■■□□□ 1.3
CUX1P39880 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CUX1P39880 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CUX1P39880 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CUX1P39880 AC000077.1-201ENST00000420012 953 ntBASIC23.17■■□□□ 1.3
CUX1P39880 KRT19P4-201ENST00000443208 943 ntBASIC23.17■■□□□ 1.3
CUX1P39880 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC23.17■■□□□ 1.3
CUX1P39880 TPT1P6-201ENST00000458298 514 ntBASIC23.17■■□□□ 1.3
CUX1P39880 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC23.17■■□□□ 1.3
CUX1P39880 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC23.17■■□□□ 1.3
CUX1P39880 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC23.17■■□□□ 1.3
CUX1P39880 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC23.17■■□□□ 1.3
CUX1P39880 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC23.17■■□□□ 1.3
CUX1P39880 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC23.17■■□□□ 1.3
CUX1P39880 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC23.17■■□□□ 1.3
CUX1P39880 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC23.17■■□□□ 1.3
CUX1P39880 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CUX1P39880 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC23.16■■□□□ 1.3
CUX1P39880 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC23.16■■□□□ 1.3
CUX1P39880 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 FAU-201ENST00000279259 461 ntTSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 DNM1P46-202ENST00000415963 882 ntBASIC23.16■■□□□ 1.3
CUX1P39880 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC23.16■■□□□ 1.3
CUX1P39880 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC23.16■■□□□ 1.3
CUX1P39880 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC23.16■■□□□ 1.3
CUX1P39880 AC005865.2-202ENST00000635814 725 ntBASIC23.16■■□□□ 1.3
CUX1P39880 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CUX1P39880 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUX1P39880 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
CUX1P39880 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CUX1P39880 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 OS9-207ENST00000439210 1946 ntTSL 2 BASIC23.15■■□□□ 1.3
CUX1P39880 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC23.15■■□□□ 1.3
CUX1P39880 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC23.15■■□□□ 1.3
CUX1P39880 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC23.15■■□□□ 1.3
CUX1P39880 YY1P2-201ENST00000438766 948 ntBASIC23.15■■□□□ 1.3
CUX1P39880 AC142086.5-202ENST00000562500 217 ntBASIC23.15■■□□□ 1.3
CUX1P39880 INO80E-209ENST00000567254 625 ntTSL 2 BASIC23.15■■□□□ 1.3
CUX1P39880 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC23.15■■□□□ 1.3
CUX1P39880 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC23.15■■□□□ 1.3
CUX1P39880 AC106782.5-201ENST00000616011 337 ntBASIC23.15■■□□□ 1.3
CUX1P39880 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 TKT-201ENST00000296289 1931 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 HSPA7-201ENST00000445535 1927 ntBASIC23.15■■□□□ 1.3
CUX1P39880 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CUX1P39880 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC23.15■■□□□ 1.3
CUX1P39880 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CUX1P39880 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC23.14■■□□□ 1.3
CUX1P39880 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CUX1P39880 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
CUX1P39880 AL359092.2-201ENST00000423330 585 ntBASIC23.14■■□□□ 1.3
CUX1P39880 AC104212.2-201ENST00000478813 628 ntBASIC23.14■■□□□ 1.3
CUX1P39880 AC008494.1-201ENST00000497612 796 ntBASIC23.14■■□□□ 1.3
CUX1P39880 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC23.14■■□□□ 1.3
CUX1P39880 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC23.14■■□□□ 1.3
CUX1P39880 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC23.14■■□□□ 1.3
CUX1P39880 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CUX1P39880 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CUX1P39880 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
CUX1P39880 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CUX1P39880 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC23.13■■□□□ 1.29
CUX1P39880 AP000533.1-201ENST00000456143 1177 ntBASIC23.13■■□□□ 1.29
CUX1P39880 B9D1-206ENST00000461069 923 ntTSL 2 BASIC23.13■■□□□ 1.29
CUX1P39880 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms