Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FREM3P0C091 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.04□□□□□ -0.32
FREM3P0C091 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FREM3P0C091 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 ELK2AP-201ENST00000392510 1007 ntBASIC13.03□□□□□ -0.32
FREM3P0C091 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.03□□□□□ -0.32
FREM3P0C091 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.03□□□□□ -0.32
FREM3P0C091 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 MIR4522-201ENST00000584932 87 ntBASIC13.03□□□□□ -0.32
FREM3P0C091 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 HSPA8P5-201ENST00000456928 2069 ntBASIC13.03□□□□□ -0.32
FREM3P0C091 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
FREM3P0C091 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
FREM3P0C091 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.03□□□□□ -0.32
FREM3P0C091 TMEM198B-204ENST00000484016 896 ntBASIC13.03□□□□□ -0.32
FREM3P0C091 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
FREM3P0C091 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FREM3P0C091 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FREM3P0C091 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.03□□□□□ -0.32
FREM3P0C091 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.02□□□□□ -0.32
FREM3P0C091 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.02□□□□□ -0.32
FREM3P0C091 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
FREM3P0C091 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
FREM3P0C091 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
FREM3P0C091 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.02□□□□□ -0.32
FREM3P0C091 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.02□□□□□ -0.32
FREM3P0C091 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
FREM3P0C091 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.02□□□□□ -0.32
FREM3P0C091 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
FREM3P0C091 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.02□□□□□ -0.33
FREM3P0C091 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
FREM3P0C091 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FREM3P0C091 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FREM3P0C091 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FREM3P0C091 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.02□□□□□ -0.33
FREM3P0C091 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.02□□□□□ -0.33
FREM3P0C091 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.02□□□□□ -0.33
FREM3P0C091 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
FREM3P0C091 RTN3P1-201ENST00000536295 711 ntBASIC13.02□□□□□ -0.33
FREM3P0C091 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.02□□□□□ -0.33
FREM3P0C091 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.02□□□□□ -0.33
FREM3P0C091 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.02□□□□□ -0.33
FREM3P0C091 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.02□□□□□ -0.33
FREM3P0C091 SPCS2P2-201ENST00000603270 608 ntBASIC13.02□□□□□ -0.33
FREM3P0C091 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
FREM3P0C091 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
FREM3P0C091 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms