Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TRIM39Q9HCM9 LINC01230-201ENST00000625222 3017 ntBASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 AL157791.1-201ENST00000553667 1699 ntBASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TRIM39Q9HCM9 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 RN7SL774P-201ENST00000577467 290 ntBASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AC021016.3-201ENST00000608367 477 ntBASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AC092299.1-201ENST00000632679 757 ntBASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AL139099.5-201ENST00000635274 300 ntBASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TRIM39Q9HCM9 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AC011498.7-201ENST00000624986 2027 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 MIR769-201ENST00000390225 118 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AC005077.2-201ENST00000449786 690 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AC104506.1-201ENST00000609247 429 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AC091544.8-201ENST00000619490 361 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AL591471.1-201ENST00000621855 229 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 NAP1L6-202ENST00000641404 1222 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AL731571.1-201ENST00000617058 5428 ntBASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms