Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 OR2R1P-201ENST00000441404 914 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 RPSAP15-201ENST00000448168 861 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC079112.1-201ENST00000454972 939 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 PGAM1P5-201ENST00000548011 764 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC003686.1-201ENST00000550956 1034 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC135983.4-201ENST00000564116 1262 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC093752.3-201ENST00000567343 901 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 YRDCP1-201ENST00000621419 643 ntBASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC3Q9BQI4 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AC023824.1-201ENST00000562945 2975 ntBASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 RPL7P35-201ENST00000446943 740 ntBASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 DUTP3-201ENST00000450025 415 ntBASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 AC005632.3-201ENST00000605544 308 ntBASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC3Q9BQI4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms