Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
CX3CL1P78423 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
CX3CL1P78423 AL590440.2-201ENST00000641973 1595 ntBASIC11.68□□□□□ -0.54
CX3CL1P78423 AC215219.1-201ENST00000400706 1817 ntBASIC11.68□□□□□ -0.54
CX3CL1P78423 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 HIST2H2BB-201ENST00000449108 381 ntBASIC11.68□□□□□ -0.54
CX3CL1P78423 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC11.68□□□□□ -0.54
CX3CL1P78423 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 AC027601.3-201ENST00000622907 509 ntBASIC11.68□□□□□ -0.54
CX3CL1P78423 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 SHC1P1-201ENST00000425230 1745 ntBASIC11.68□□□□□ -0.54
CX3CL1P78423 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
CX3CL1P78423 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CX3CL1P78423 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC11.68□□□□□ -0.54
CX3CL1P78423 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CX3CL1P78423 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CX3CL1P78423 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 AC130686.1-201ENST00000622936 2466 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
CX3CL1P78423 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC11.67□□□□□ -0.54
CX3CL1P78423 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms