Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 AL357673.2-201ENST00000623663 4969 ntTSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
CKS1BP61024 CD82-202ENST00000342935 967 ntTSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 CUL5-201ENST00000393094 6351 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC10.21□□□□□ -0.77
CKS1BP61024 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 KRT18P43-201ENST00000469825 1281 ntBASIC10.21□□□□□ -0.77
CKS1BP61024 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC10.21□□□□□ -0.77
CKS1BP61024 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC10.21□□□□□ -0.77
CKS1BP61024 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 UBL5-208ENST00000593087 320 ntTSL 3 BASIC10.21□□□□□ -0.77
CKS1BP61024 AC025181.2-201ENST00000606994 802 ntBASIC10.21□□□□□ -0.77
CKS1BP61024 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC10.21□□□□□ -0.77
CKS1BP61024 AC007967.4-201ENST00000614700 386 ntBASIC10.21□□□□□ -0.77
CKS1BP61024 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CKS1BP61024 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC10.21□□□□□ -0.77
CKS1BP61024 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 SMAD9-201ENST00000350148 5447 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CKS1BP61024 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 DEK-201ENST00000244776 1441 ntTSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CKS1BP61024 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 GPRASP1-201ENST00000361600 5971 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 OTOG-202ENST00000399391 8778 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 C14orf119-201ENST00000319074 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC10.21□□□□□ -0.78
CKS1BP61024 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 AMT-239ENST00000636865 1914 ntTSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 AC023355.1-202ENST00000612262 4242 ntTSL 5 BASIC10.21□□□□□ -0.78
CKS1BP61024 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CKS1BP61024 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC10.21□□□□□ -0.78
CKS1BP61024 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CKS1BP61024 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 FAM156B-203ENST00000593751 2942 ntAPPRIS P2 TSL 2 BASIC10.2□□□□□ -0.78
CKS1BP61024 FAM156A-201ENST00000596733 2942 ntAPPRIS P2 TSL 2 BASIC10.2□□□□□ -0.78
CKS1BP61024 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
CKS1BP61024 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC10.2□□□□□ -0.78
CKS1BP61024 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
CKS1BP61024 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC10.2□□□□□ -0.78
CKS1BP61024 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
CKS1BP61024 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 FBXO9-202ENST00000323557 3418 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC10.2□□□□□ -0.78
CKS1BP61024 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CKS1BP61024 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms