RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 NISCHQ9Y2I1 1504 aa23.66■■□□□ 1.38
SMAD9-201ENST00000350148 DCAF8L2P0C7V8 631 aa21.57■■□□□ 1.04
SMAD9-201ENST00000350148 SHROOM4Q9ULL8 1493 aa20.61■□□□□ 0.89
SMAD9-201ENST00000350148 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
SMAD9-201ENST00000350148 CCDC180Q9P1Z9 1646 aa20.19■□□□□ 0.82
SMAD9-201ENST00000350148 ZCCHC6Q5VYS8 1495 aaKnown RBP19.75■□□□□ 0.75
SMAD9-201ENST00000350148 ABCC9O60706 1549 aa19.72■□□□□ 0.75
SMAD9-201ENST00000350148 TRIM41Q8WV44 630 aa19.33■□□□□ 0.69
SMAD9-201ENST00000350148 DCAF1Q9Y4B6 1507 aa19.32■□□□□ 0.68
SMAD9-201ENST00000350148 NACADO15069 1562 aa19.22■□□□□ 0.67
SMAD9-201ENST00000350148 RB1CC1Q8TDY2 1594 aa19.18■□□□□ 0.66
SMAD9-201ENST00000350148 SCRIBQ14160 1630 aa19.1■□□□□ 0.65
SMAD9-201ENST00000350148 MYT1Q01538 1121 aa19.1■□□□□ 0.65
SMAD9-201ENST00000350148 APLP2Q06481 763 aa19.08■□□□□ 0.65
SMAD9-201ENST00000350148 FAM9AQ8IZU1 332 aaPredicted RBP19.07■□□□□ 0.64
SMAD9-201ENST00000350148 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.63
SMAD9-201ENST00000350148 CHIC1Q5VXU3 224 aa18.99■□□□□ 0.63
SMAD9-201ENST00000350148 PELP1Q8IZL8 1130 aaKnown RBP18.99■□□□□ 0.63
SMAD9-201ENST00000350148 MYO15BQ96JP2 1530 aa18.97■□□□□ 0.63
SMAD9-201ENST00000350148 EHMT2Q96KQ7 1210 aa18.97■□□□□ 0.63
SMAD9-201ENST00000350148 UBTFP17480 764 aaKnown RBP18.79■□□□□ 0.6
SMAD9-201ENST00000350148 PCGF6Q9BYE7 350 aa18.61■□□□□ 0.57
SMAD9-201ENST00000350148 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.56
SMAD9-201ENST00000350148 ZEB1P37275 1124 aaPredicted RBP18.57■□□□□ 0.56
SMAD9-201ENST00000350148 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
SMAD9-201ENST00000350148 RANGAP1P46060 587 aaPredicted RBP18.44■□□□□ 0.54
SMAD9-201ENST00000350148 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
SMAD9-201ENST00000350148 LOC105371045A0A1W2PR82 267 aa18.4■□□□□ 0.54
SMAD9-201ENST00000350148 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
SMAD9-201ENST00000350148 ATP1B4Q9UN42 357 aaPredicted RBP18.33■□□□□ 0.53
SMAD9-201ENST00000350148 HRCP23327 699 aa18.32■□□□□ 0.52
SMAD9-201ENST00000350148 TTBK1Q5TCY1 1321 aaPredicted RBP18.3■□□□□ 0.52
SMAD9-201ENST00000350148 BAZ1BQ9UIG0 1483 aaKnown RBP18.3■□□□□ 0.52
SMAD9-201ENST00000350148 CSRNP3Q8WYN3 585 aa18.25■□□□□ 0.51
SMAD9-201ENST00000350148 CECR2Q9BXF3 1484 aa18.25■□□□□ 0.51
SMAD9-201ENST00000350148 CCER1Q8TC90 406 aaPredicted RBP18.23■□□□□ 0.51
SMAD9-201ENST00000350148 SMARCA2P51531 1590 aa18.18■□□□□ 0.5
SMAD9-201ENST00000350148 EEA1Q15075 1411 aa18.18■□□□□ 0.5
SMAD9-201ENST00000350148 MROH2BQ7Z745 1585 aa18.15■□□□□ 0.5
SMAD9-201ENST00000350148 TOP2AP11388 1531 aaKnown RBP18.06■□□□□ 0.48
SMAD9-201ENST00000350148 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.48
SMAD9-201ENST00000350148 SMARCA4P51532 1647 aa18■□□□□ 0.47
SMAD9-201ENST00000350148 CCDC88BA6NC98 1476 aa17.94■□□□□ 0.46
SMAD9-201ENST00000350148 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.93■□□□□ 0.46
SMAD9-201ENST00000350148 HNRNPUL2Q1KMD3 747 aaKnown RBP17.93■□□□□ 0.46
SMAD9-201ENST00000350148 ERICH6Q7L0X2 663 aa17.92■□□□□ 0.46
SMAD9-201ENST00000350148 WIZO95785 1651 aa17.91■□□□□ 0.46
SMAD9-201ENST00000350148 ATAD2BQ9ULI0 1458 aa17.87■□□□□ 0.45
SMAD9-201ENST00000350148 GOLGA3Q08378 1498 aa17.86■□□□□ 0.45
SMAD9-201ENST00000350148 KIF27Q86VH2 1401 aa17.83■□□□□ 0.44
SMAD9-201ENST00000350148 CEP164Q9UPV0 1460 aa17.8■□□□□ 0.44
SMAD9-201ENST00000350148 TNIKQ9UKE5 1360 aa17.75■□□□□ 0.43
SMAD9-201ENST00000350148 ITGAEP38570 1179 aa17.74■□□□□ 0.43
SMAD9-201ENST00000350148 CLIP1P30622 1438 aa17.7■□□□□ 0.42
SMAD9-201ENST00000350148 CENPBP07199 599 aaPredicted RBP17.7■□□□□ 0.42
SMAD9-201ENST00000350148 FBLN2P98095 1184 aa17.7■□□□□ 0.42
SMAD9-201ENST00000350148 CDK11AQ9UQ88 783 aaPredicted RBP17.69■□□□□ 0.42
SMAD9-201ENST00000350148 PDS5BQ9NTI5 1447 aa17.68■□□□□ 0.42
SMAD9-201ENST00000350148 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
SMAD9-201ENST00000350148 NCAPD3P42695 1498 aa17.67■□□□□ 0.42
SMAD9-201ENST00000350148 CADPSQ9ULU8 1353 aa17.65■□□□□ 0.42
SMAD9-201ENST00000350148 CEP162Q5TB80 1403 aa17.64■□□□□ 0.41
SMAD9-201ENST00000350148 EIF4G1Q04637 1599 aaKnown RBP17.59■□□□□ 0.41
SMAD9-201ENST00000350148 YTHDC1Q96MU7 727 aaKnown RBP17.59■□□□□ 0.41
SMAD9-201ENST00000350148 P3H3Q8IVL6 736 aa17.57■□□□□ 0.4
SMAD9-201ENST00000350148 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
SMAD9-201ENST00000350148 ERCC6Q03468 1493 aa17.55■□□□□ 0.4
SMAD9-201ENST00000350148 MYT1LQ9UL68 1186 aa17.54■□□□□ 0.4
SMAD9-201ENST00000350148 CUX2O14529 1486 aa17.53■□□□□ 0.4
SMAD9-201ENST00000350148 HMGXB3Q12766 1538 aa17.52■□□□□ 0.39
SMAD9-201ENST00000350148 CHMP7Q8WUX9 453 aaPredicted RBP17.51■□□□□ 0.39
SMAD9-201ENST00000350148 SOGA1O94964 1423 aa17.51■□□□□ 0.39
SMAD9-201ENST00000350148 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
SMAD9-201ENST00000350148 CARMIL1Q5VZK9 1371 aa17.48■□□□□ 0.39
SMAD9-201ENST00000350148 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
SMAD9-201ENST00000350148 ACIN1Q9UKV3 1341 aaKnown RBP17.43■□□□□ 0.38
SMAD9-201ENST00000350148 TRIM52Q96A61 297 aa17.42■□□□□ 0.38
SMAD9-201ENST00000350148 FHAD1B1AJZ9 1412 aa17.42■□□□□ 0.38
SMAD9-201ENST00000350148 MTUS2Q5JR59 1369 aa17.39■□□□□ 0.37
SMAD9-201ENST00000350148 FANCD2Q9BXW9 1451 aa17.39■□□□□ 0.37
SMAD9-201ENST00000350148 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
SMAD9-201ENST00000350148 GTF3C3Q9Y5Q9 886 aa17.34■□□□□ 0.37
SMAD9-201ENST00000350148 CFTRP13569 1480 aa17.31■□□□□ 0.36
SMAD9-201ENST00000350148 VPS8Q8N3P4 1428 aa17.31■□□□□ 0.36
SMAD9-201ENST00000350148 UNC13AQ9UPW8 1703 aa17.31■□□□□ 0.36
SMAD9-201ENST00000350148 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
SMAD9-201ENST00000350148 NPM1P06748 294 aaKnown RBP eCLIP17.28■□□□□ 0.36
SMAD9-201ENST00000350148 CC2D2AQ9P2K1 1620 aa17.26■□□□□ 0.35
SMAD9-201ENST00000350148 ARID3CA6NKF2 412 aa17.23■□□□□ 0.35
SMAD9-201ENST00000350148 DIEXFQ68CQ4 756 aaKnown RBP17.22■□□□□ 0.35
SMAD9-201ENST00000350148 NEUROD1Q13562 356 aa17.21■□□□□ 0.35
SMAD9-201ENST00000350148 ZNF777Q9ULD5 760 aaPredicted RBP17.21■□□□□ 0.34
SMAD9-201ENST00000350148 FMN1Q68DA7 1419 aa17.2■□□□□ 0.34
SMAD9-201ENST00000350148 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
SMAD9-201ENST00000350148 NEFLP07196 543 aa17.19■□□□□ 0.34
SMAD9-201ENST00000350148 PLEKHD1A6NEE1 506 aa17.19■□□□□ 0.34
SMAD9-201ENST00000350148 FGD5Q6ZNL6 1462 aa17.17■□□□□ 0.34
SMAD9-201ENST00000350148 TDRD9Q8NDG6 1382 aaKnown RBP17.17■□□□□ 0.34
SMAD9-201ENST00000350148 CARMIL2Q6F5E8 1435 aa17.16■□□□□ 0.34
SMAD9-201ENST00000350148 TSPY4P0CV99 314 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 189.4 ms