Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.84□□□□□ -0.35
GFRA1P56159 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 AC073869.2-201ENST00000417338 1026 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 AL807761.2-201ENST00000422849 729 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC12.84□□□□□ -0.35
GFRA1P56159 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC12.84□□□□□ -0.35
GFRA1P56159 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.84□□□□□ -0.35
GFRA1P56159 FOS-206ENST00000555347 1280 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.84□□□□□ -0.35
GFRA1P56159 AC007326.1-201ENST00000604539 458 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
GFRA1P56159 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.84□□□□□ -0.35
GFRA1P56159 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 RPL13AP3-202ENST00000494676 1473 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.84□□□□□ -0.35
GFRA1P56159 FAM45BP-202ENST00000592932 1624 ntBASIC12.84□□□□□ -0.35
GFRA1P56159 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
GFRA1P56159 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.84□□□□□ -0.35
GFRA1P56159 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
GFRA1P56159 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
GFRA1P56159 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 AL009178.2-201ENST00000597278 2719 ntBASIC12.83□□□□□ -0.35
GFRA1P56159 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
GFRA1P56159 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 AC091046.1-201ENST00000331871 207 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 AC026316.1-201ENST00000398900 414 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC12.83□□□□□ -0.36
GFRA1P56159 AL592076.1-201ENST00000424448 303 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 ALG1L13P-202ENST00000519320 584 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.83□□□□□ -0.36
GFRA1P56159 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
GFRA1P56159 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.83□□□□□ -0.36
GFRA1P56159 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.83□□□□□ -0.36
GFRA1P56159 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.83□□□□□ -0.36
GFRA1P56159 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC12.83□□□□□ -0.36
GFRA1P56159 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
GFRA1P56159 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.83□□□□□ -0.36
GFRA1P56159 AC103691.2-201ENST00000618824 433 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 AC128714.1-201ENST00000637035 887 ntBASIC12.83□□□□□ -0.36
GFRA1P56159 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
GFRA1P56159 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms