Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC15.17■□□□□ 0.02
LHX1P48742 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.17■□□□□ 0.02
LHX1P48742 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC15.17■□□□□ 0.02
LHX1P48742 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.17■□□□□ 0.02
LHX1P48742 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.17■□□□□ 0.02
LHX1P48742 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.17■□□□□ 0.02
LHX1P48742 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 AC103810.10-201ENST00000606504 343 ntBASIC15.17■□□□□ 0.02
LHX1P48742 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.17■□□□□ 0.02
LHX1P48742 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.17■□□□□ 0.02
LHX1P48742 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 FAM45BP-202ENST00000592932 1624 ntBASIC15.17■□□□□ 0.02
LHX1P48742 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LHX1P48742 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.16■□□□□ 0.02
LHX1P48742 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 AC026316.1-201ENST00000398900 414 ntBASIC15.16■□□□□ 0.02
LHX1P48742 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 CHCHD2P2-201ENST00000503744 321 ntBASIC15.16■□□□□ 0.02
LHX1P48742 GOLGA2P8-201ENST00000505201 779 ntBASIC15.16■□□□□ 0.02
LHX1P48742 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.16■□□□□ 0.02
LHX1P48742 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.16■□□□□ 0.02
LHX1P48742 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.16■□□□□ 0.02
LHX1P48742 PRKXP1-201ENST00000561423 1122 ntBASIC15.16■□□□□ 0.02
LHX1P48742 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.16■□□□□ 0.02
LHX1P48742 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.16■□□□□ 0.02
LHX1P48742 AC103691.2-201ENST00000618824 433 ntBASIC15.16■□□□□ 0.02
LHX1P48742 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 TCAM1P-207ENST00000485295 1537 ntBASIC15.16■□□□□ 0.02
LHX1P48742 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.16■□□□□ 0.02
LHX1P48742 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 AMT-256ENST00000638063 1783 ntTSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.16■□□□□ 0.02
LHX1P48742 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LHX1P48742 AC152010.1-201ENST00000415779 2006 ntBASIC15.16■□□□□ 0.02
LHX1P48742 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
LHX1P48742 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LHX1P48742 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LHX1P48742 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LHX1P48742 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LHX1P48742 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LHX1P48742 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.15■□□□□ 0.02
LHX1P48742 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms