Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC12.58□□□□□ -0.4
COL8A1P27658 RHOQP2-201ENST00000449922 579 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
COL8A1P27658 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.58□□□□□ -0.4
COL8A1P27658 IGKV1OR-2-201ENST00000457995 350 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC12.58□□□□□ -0.4
COL8A1P27658 AC092612.1-201ENST00000514501 998 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 IGHEP2-201ENST00000519308 1256 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC12.58□□□□□ -0.4
COL8A1P27658 AC068831.5-201ENST00000557387 328 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC12.58□□□□□ -0.4
COL8A1P27658 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 AL160191.2-201ENST00000603975 601 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
COL8A1P27658 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.58□□□□□ -0.4
COL8A1P27658 ZBED1P1-201ENST00000502364 1930 ntBASIC12.58□□□□□ -0.4
COL8A1P27658 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL8A1P27658 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.58□□□□□ -0.4
COL8A1P27658 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
COL8A1P27658 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 MIR645-201ENST00000385283 94 ntBASIC12.57□□□□□ -0.4
COL8A1P27658 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC12.57□□□□□ -0.4
COL8A1P27658 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 NME6-208ENST00000435684 599 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 LINC02447-202ENST00000501888 2146 ntBASIC12.57□□□□□ -0.4
COL8A1P27658 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 AC092862.1-201ENST00000541534 533 ntBASIC12.57□□□□□ -0.4
COL8A1P27658 DUT-207ENST00000559416 635 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC12.57□□□□□ -0.4
COL8A1P27658 BX088702.1-201ENST00000610784 235 ntBASIC12.57□□□□□ -0.4
COL8A1P27658 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
COL8A1P27658 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 AC112504.1-201ENST00000623415 1841 ntBASIC12.57□□□□□ -0.4
COL8A1P27658 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.57□□□□□ -0.4
COL8A1P27658 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL8A1P27658 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.57□□□□□ -0.4
COL8A1P27658 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms