Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC14.69□□□□□ -0.06
COL9A1P20849 DPY19L2P4-201ENST00000479881 442 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 RNF7-205ENST00000480908 782 ntTSL 4 BASIC14.69□□□□□ -0.06
COL9A1P20849 RN7SL147P-201ENST00000487345 298 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 SPINK1-203ENST00000510027 1188 ntTSL 3 BASIC14.69□□□□□ -0.06
COL9A1P20849 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC115102.1-201ENST00000558044 487 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC14.69□□□□□ -0.06
COL9A1P20849 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC115989.2-201ENST00000578640 563 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 AL034374.2-201ENST00000605281 548 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 STARD13-AS-240ENST00000609608 865 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 AL591424.3-201ENST00000614278 872 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 AC106795.5-201ENST00000623288 454 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.68□□□□□ -0.06
COL9A1P20849 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.68□□□□□ -0.06
COL9A1P20849 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC139712.1-201ENST00000378256 1875 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL9A1P20849 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 LINC00469-201ENST00000321800 708 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 KRT18P4-201ENST00000422599 1288 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 AC096631.1-202ENST00000440162 917 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 AP002807.1-203ENST00000534517 664 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 BMF-206ENST00000558774 671 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC009268.1-201ENST00000561352 1203 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC016582.2-202ENST00000587765 1094 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC008507.2-201ENST00000588402 1176 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 AC139713.2-207ENST00000641556 1292 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL9A1P20849 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 AC123912.3-201ENST00000600907 1367 ntBASIC14.68□□□□□ -0.06
COL9A1P20849 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.68□□□□□ -0.06
COL9A1P20849 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL9A1P20849 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 350.8 ms