Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
APOBP04114 AL157832.2-205ENST00000597245 1649 ntBASIC8.58□□□□□ -1.04
APOBP04114 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
APOBP04114 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC8.58□□□□□ -1.04
APOBP04114 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC8.58□□□□□ -1.04
APOBP04114 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC8.58□□□□□ -1.04
APOBP04114 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC8.58□□□□□ -1.04
APOBP04114 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC8.58□□□□□ -1.04
APOBP04114 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 BX640514.1-201ENST00000583223 1918 ntBASIC8.58□□□□□ -1.04
APOBP04114 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC8.58□□□□□ -1.04
APOBP04114 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC8.58□□□□□ -1.04
APOBP04114 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC8.58□□□□□ -1.04
APOBP04114 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC8.58□□□□□ -1.04
APOBP04114 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
APOBP04114 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC8.58□□□□□ -1.04
APOBP04114 HAX1-211ENST00000532105 771 ntTSL 3 BASIC8.58□□□□□ -1.04
APOBP04114 AL139317.2-201ENST00000556998 158 ntBASIC8.58□□□□□ -1.04
APOBP04114 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC8.58□□□□□ -1.04
APOBP04114 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
APOBP04114 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC8.58□□□□□ -1.04
APOBP04114 AC002511.3-201ENST00000638098 420 ntBASIC8.58□□□□□ -1.04
APOBP04114 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 DLX4-206ENST00000611342 1662 ntBASIC8.57□□□□□ -1.04
APOBP04114 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
APOBP04114 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
APOBP04114 ACTG1P23-201ENST00000437653 1074 ntBASIC8.57□□□□□ -1.04
APOBP04114 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC8.57□□□□□ -1.04
APOBP04114 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC8.57□□□□□ -1.04
APOBP04114 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC8.57□□□□□ -1.04
APOBP04114 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 PDLIM1P1-201ENST00000604187 969 ntBASIC8.57□□□□□ -1.04
APOBP04114 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 KRT18P45-201ENST00000515347 1333 ntBASIC8.57□□□□□ -1.04
APOBP04114 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 RNA5SP84-201ENST00000364740 107 ntBASIC8.57□□□□□ -1.04
APOBP04114 AC116347.1-201ENST00000442824 720 ntBASIC8.57□□□□□ -1.04
APOBP04114 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC8.57□□□□□ -1.04
APOBP04114 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC8.57□□□□□ -1.04
APOBP04114 AL033381.2-201ENST00000603854 732 ntBASIC8.57□□□□□ -1.04
APOBP04114 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 KRT8P42-201ENST00000405771 1399 ntBASIC8.57□□□□□ -1.04
APOBP04114 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
APOBP04114 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 NRADDP-202ENST00000641269 1585 ntBASIC8.57□□□□□ -1.04
APOBP04114 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 AL121994.1-201ENST00000413189 402 ntBASIC8.57□□□□□ -1.04
APOBP04114 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 OR52X1P-201ENST00000446117 914 ntBASIC8.57□□□□□ -1.04
APOBP04114 HNRNPA1P73-201ENST00000446472 928 ntBASIC8.57□□□□□ -1.04
APOBP04114 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC8.57□□□□□ -1.04
APOBP04114 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 CD9-212ENST00000610354 1315 ntTSL 5 BASIC8.57□□□□□ -1.04
APOBP04114 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
APOBP04114 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
APOBP04114 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 MGST3-204ENST00000367888 778 ntTSL 3 BASIC8.56□□□□□ -1.04
APOBP04114 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC8.56□□□□□ -1.04
APOBP04114 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
APOBP04114 RPSAP16-201ENST00000447583 821 ntBASIC8.56□□□□□ -1.04
APOBP04114 EEF1GP2-201ENST00000509352 1243 ntBASIC8.56□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 253.5 ms