Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX2-2O95096 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX2-2O95096 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX2-2O95096 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX2-2O95096 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX2-2O95096 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
NKX2-2O95096 AL590824.1-201ENST00000403828 1349 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.25□□□□□ -0.29
NKX2-2O95096 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX2-2O95096 NKAIN1P1-201ENST00000435754 582 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX2-2O95096 ACTBP11-201ENST00000436287 1126 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 AK2P2-201ENST00000439142 405 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX2-2O95096 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX2-2O95096 AC044849.1-201ENST00000519737 1188 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX2-2O95096 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.25□□□□□ -0.29
NKX2-2O95096 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.25□□□□□ -0.29
NKX2-2O95096 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
NKX2-2O95096 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
NKX2-2O95096 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.25□□□□□ -0.29
NKX2-2O95096 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX2-2O95096 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 LINC00115-201ENST00000473798 1317 ntBASIC13.24□□□□□ -0.29
NKX2-2O95096 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 TSPY25P-201ENST00000429463 745 ntBASIC13.24□□□□□ -0.29
NKX2-2O95096 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.24□□□□□ -0.29
NKX2-2O95096 AC108725.1-201ENST00000495472 409 ntBASIC13.24□□□□□ -0.29
NKX2-2O95096 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 KRT18P8-201ENST00000581937 1246 ntBASIC13.24□□□□□ -0.29
NKX2-2O95096 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.24□□□□□ -0.29
NKX2-2O95096 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.24□□□□□ -0.29
NKX2-2O95096 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-2O95096 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-2O95096 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-2O95096 SBF1P1-201ENST00000444527 5631 ntBASIC13.24□□□□□ -0.29
NKX2-2O95096 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-2O95096 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-2O95096 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 LINC02486-201ENST00000604157 3000 ntBASIC13.23□□□□□ -0.29
NKX2-2O95096 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-2O95096 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-2O95096 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 LINC01815-202ENST00000641468 1409 ntBASIC13.23□□□□□ -0.29
NKX2-2O95096 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-2O95096 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-2O95096 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms