Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP4O75161 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC19.55■□□□□ 0.72
NPHP4O75161 AC133555.4-201ENST00000569081 152 ntBASIC19.55■□□□□ 0.72
NPHP4O75161 RN7SL134P-201ENST00000579756 303 ntBASIC19.55■□□□□ 0.72
NPHP4O75161 MIR5193-201ENST00000584510 109 ntBASIC19.55■□□□□ 0.72
NPHP4O75161 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NPHP4O75161 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP4O75161 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP4O75161 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP4O75161 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP4O75161 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 KRT8P25-201ENST00000473150 1456 ntBASIC19.54■□□□□ 0.72
NPHP4O75161 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 AC011477.7-201ENST00000617163 1440 ntBASIC19.54■□□□□ 0.72
NPHP4O75161 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC19.54■□□□□ 0.72
NPHP4O75161 ACTG1P23-201ENST00000437653 1074 ntBASIC19.54■□□□□ 0.72
NPHP4O75161 AC103724.2-201ENST00000520355 476 ntBASIC19.54■□□□□ 0.72
NPHP4O75161 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
NPHP4O75161 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NPHP4O75161 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP4O75161 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP4O75161 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC19.53■□□□□ 0.72
NPHP4O75161 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC19.53■□□□□ 0.72
NPHP4O75161 RN7SL363P-201ENST00000482412 273 ntBASIC19.53■□□□□ 0.72
NPHP4O75161 RPL29P2-202ENST00000498671 657 ntBASIC19.53■□□□□ 0.72
NPHP4O75161 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC19.53■□□□□ 0.72
NPHP4O75161 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
NPHP4O75161 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
NPHP4O75161 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP4O75161 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP4O75161 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP4O75161 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP4O75161 SDCBP2P1-201ENST00000416115 614 ntBASIC19.52■□□□□ 0.72
NPHP4O75161 IQCF4-203ENST00000428561 420 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms