Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 AL591122.2-201ENST00000624125 1853 ntBASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 LINC00115-201ENST00000473798 1317 ntBASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 INTS4P1-203ENST00000641008 3683 ntBASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHROOM4Q9ULL8 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 AC064801.2-201ENST00000625052 1303 ntBASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 AC023824.1-201ENST00000562945 2975 ntBASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM4Q9ULL8 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 RPS23-207ENST00000511844 530 ntTSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AC113347.2-201ENST00000512350 279 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 KRT8P2-201ENST00000556193 944 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 MAX-218ENST00000557746 571 ntTSL 4 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AC092570.1-201ENST00000414446 469 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AC010900.1-201ENST00000449849 1296 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 SCARNA12-201ENST00000459155 270 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 AC233280.19-201ENST00000633223 136 ntBASIC26.93■■□□□ 1.9
SHROOM4Q9ULL8 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 AC106881.1-201ENST00000605849 3329 ntBASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 KRT18P4-201ENST00000422599 1288 ntBASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 AC008026.2-201ENST00000495438 348 ntBASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SHROOM4Q9ULL8 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM4Q9ULL8 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC26.91■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms