Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCM2LQ9NUG4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 PCDHB18P-202ENST00000526308 3197 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AL139094.1-201ENST00000405549 1188 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC136604.1-202ENST00000425471 771 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 CTBP2P5-201ENST00000454986 1264 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC104596.2-201ENST00000512793 793 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 TIMM17BP1-201ENST00000545713 516 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC107373.2-201ENST00000607735 490 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC244093.1-201ENST00000610837 814 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AL158212.4-201ENST00000624062 1286 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 MARK2P9-201ENST00000430958 1727 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AC020907.1-201ENST00000616460 1350 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AGAP12P-201ENST00000585227 2359 ntBASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCM2LQ9NUG4 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 KLF2P4-201ENST00000451959 1225 ntBASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.79□□□□□ -0.2
CCM2LQ9NUG4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms