Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ZC2HC1C-203ENST00000524913 4283 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ACTBP8-201ENST00000403258 1108 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RN7SL67P-201ENST00000492147 296 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC134698.3-201ENST00000523880 214 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NPM1P43-201ENST00000558669 786 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AP003419.4-201ENST00000616071 517 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC025262.2-201ENST00000623975 1056 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC244394.1-201ENST00000435000 1665 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RPRD1B-201ENST00000373433 3874 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 LRP2-202ENST00000443831 4007 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC234782.1-201ENST00000451950 919 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC024681.1-201ENST00000521917 487 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CYP2T1P-202ENST00000641596 2535 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RCBTB2-202ENST00000430805 3179 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NR4A3-203ENST00000395097 3794 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC106820.3-201ENST00000561653 397 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GSN-215ENST00000545652 2428 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FGFR3P1-201ENST00000449999 601 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AL358472.3-201ENST00000608147 415 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PSPN-202ENST00000597721 3911 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms