Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 CARS-214ENST00000529772 2637 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 MRPL3P1-201ENST00000400109 1033 ntBASIC10.66□□□□□ -0.7
CKS2P33552 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC10.66□□□□□ -0.7
CKS2P33552 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 NUS1P3-201ENST00000423502 862 ntBASIC10.66□□□□□ -0.7
CKS2P33552 AL353779.1-201ENST00000434793 351 ntBASIC10.66□□□□□ -0.7
CKS2P33552 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 RPL13AP23-201ENST00000480739 586 ntBASIC10.66□□□□□ -0.7
CKS2P33552 GATD1-206ENST00000526325 756 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 GPX4-206ENST00000588919 803 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 ZKSCAN3-203ENST00000377255 4799 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC10.66□□□□□ -0.7
CKS2P33552 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC10.66□□□□□ -0.7
CKS2P33552 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
CKS2P33552 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 PCDHA4-202ENST00000512229 4163 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS2P33552 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 ZNF773-205ENST00000599847 5832 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 FBXO22-201ENST00000308275 10725 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 AC022400.8-201ENST00000623453 3599 ntBASIC10.65□□□□□ -0.7
CKS2P33552 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CKS2P33552 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CKS2P33552 IPPK-202ENST00000375522 882 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 AL591424.1-201ENST00000442569 1213 ntBASIC10.65□□□□□ -0.7
CKS2P33552 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 GLI4-203ENST00000517468 963 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 SORD2P-201ENST00000558556 1069 ntBASIC10.65□□□□□ -0.7
CKS2P33552 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC10.65□□□□□ -0.7
CKS2P33552 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CKS2P33552 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CKS2P33552 ARL16-209ENST00000573715 763 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 ARL16-211ENST00000576135 694 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS2P33552 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC10.65□□□□□ -0.7
CKS2P33552 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
CKS2P33552 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS2P33552 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms